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Openlab is a proprietary software package for performing 2D microscope image processing and integrating and controlling a diverse array of instrumentation in a laboratory environment. It consists of a core application which can manage large arrays of image data, and a series of separate plug-in modules which implement a variety of tasks according to the needs of the end user. The customer is able to tailor the system to exactly their own requirements, but use a coherent GUI to operate the entire system.
The software suite has four basic areas of operation – acquisition, image presentation, and storage, analysis, and automation. Most types of microscope and camera are supported for acquiring images, which are then available to the rest of the system in a common format. A number of deconvolution algorithms are available to dramatically improve image quality. Analysis involves extracting data into the package's own spreadsheet-like interface, or exporting raw measurements to external software.
Openlab can control a large number of devices found in the typical laboratory, as well as the microscope itself – focus drives, XY Stages, optical filters, drug-delivery systems, etc. The package provides for manual control of all of these items through its GUI, or using its automator, a built in graphical programming language.
A package manager or package-management system is a collection of software tools that automates the process of installing, upgrading, configuring, and removing computer programs for a computer's operating system in a consistent manner.
GNU Octave is software featuring a high-level programming language, primarily intended for numerical computations. Octave helps in solving linear and nonlinear problems numerically, and for performing other numerical experiments using a language that is mostly compatible with MATLAB. It may also be used as a batch-oriented language. Since it is part of the GNU Project, it is free software under the terms of the GNU General Public License.
An application service provider (ASP) is a business providing computer-based services to customers over a network; such as access to a particular software application using a standard protocol.
R is a programming language and free software environment for statistical computing and graphics supported by the R Core Team and the R Foundation for Statistical Computing. It is widely used among statisticians and data miners for developing statistical software and data analysis. Polls, data mining surveys, and studies of scholarly literature databases show substantial increases in R's popularity; since August 2021, R ranks 14th in the TIOBE index, a measure of popularity of programming languages.
The Starlink Project, referred to by users as Starlink and by developers as simply The Project, was a UK astronomical computing project which supplied general-purpose data reduction software. Until the late 1990s, it also supplied computing hardware and system administration personnel to UK astronomical institutes. In the former respect, it was analogous to the US IRAF project.
A light field camera, also known as a plenoptic camera, is a camera that captures information about the light field emanating from a scene; that is, the intensity of light in a scene, and also the precise direction that the light rays are traveling in space. This contrasts with conventional cameras, which record only light intensity.
Neural network software is used to simulate, research, develop, and apply artificial neural networks, software concepts adapted from biological neural networks, and in some cases, a wider array of adaptive systems such as artificial intelligence and machine learning.
ImageJ is a Java-based image processing program developed at the National Institutes of Health and the Laboratory for Optical and Computational Instrumentation. Its first version, ImageJ 1.x, is developed in the public domain, while ImageJ2 and the related projects SciJava, ImgLib2, and SCIFIO are licensed with a permissive BSD-2 license. ImageJ was designed with an open architecture that provides extensibility via Java plugins and recordable macros. Custom acquisition, analysis and processing plugins can be developed using ImageJ's built-in editor and a Java compiler. User-written plugins make it possible to solve many image processing and analysis problems, from three-dimensional live-cell imaging to radiological image processing, multiple imaging system data comparisons to automated hematology systems. ImageJ's plugin architecture and built-in development environment has made it a popular platform for teaching image processing.
Enterprise content integration (ECI) is a marketing buzzword for middleware software technology, often used within large organizations, that connects together various types of computer systems that manage documents and digital content. ECI systems often work in tandem with other technologies such as enterprise content management, document management, groupware, and records management. It takes a decentralized approach in order to manage content from various resources. ECI implementations exist on a tier above the organization's existing software and provide wide-ranging search, indexing, and access functions.
The Astronomical Image Processing System (AIPS) is a software package to support the reduction and analysis of data taken with radio telescopes. Developed predominantly for use with the then under-construction VLA, the generality inherent in its design allowed it to become the standard data-reduction package for most radio interferometers, including VLBI. Limited single-dish capability is also featured. Although partially replaced by CASA, it continues to evolve and remains widely used.
NetCDF is a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. The project homepage is hosted by the Unidata program at the University Corporation for Atmospheric Research (UCAR). They are also the chief source of netCDF software, standards development, updates, etc. The format is an open standard. NetCDF Classic and 64-bit Offset Format are an international standard of the Open Geospatial Consortium.
Chronux is an open-source software package developed for the loading, visualization and analysis of a variety of modalities / formats of neurobiological time series data. Usage of this tool enables neuroscientists to perform a variety of analysis on multichannel electrophysiological data such as LFP, EEG, MEG, Neuronal spike times and also on spatiotemporal data such as FMRI and dynamic optical imaging data. The software consists of a set of MATLAB routines interfaced with C libraries that can be used to perform the tasks that constitute a typical study of neurobiological data. These include local regression and smoothing, spike sorting and spectral analysis - including multitaper spectral analysis, a powerful nonparametric method to estimate power spectrum. The package also includes some GUIs for time series visualization and analysis. Chronux is GNU GPL v2 licensed.
A storage area network (SAN) or storage network is a computer network which provides access to consolidated, block-level data storage. SANs are primarily used to access data storage devices, such as disk arrays and tape libraries from servers so that the devices appear to the operating system as direct-attached storage. A SAN typically is a dedicated network of storage devices not accessible through the local area network (LAN).
Scanning SQUID microscopy is a technique where a superconducting quantum interference device (SQUID) is used to image surface magnetic field strength with micrometre scale resolution. A tiny SQUID is mounted onto a tip which is then rastered near the surface of the sample to be measured. As the SQUID is the most sensitive detector of magnetic fields available and can be constructed at submicrometre widths via lithography, the scanning SQUID microscope allows magnetic fields to be measured with unparalleled resolution and sensitivity. The first scanning SQUID microscope was built in 1992 by Black et al. Since then the technique has been used to confirm unconventional superconductivity in several high-temperature superconductors including YBCO and BSCCO compounds.
Software-defined storage (SDS) is a marketing term for computer data storage software for policy-based provisioning and management of data storage independent of the underlying hardware. Software-defined storage typically includes a form of storage virtualization to separate the storage hardware from the software that manages it. The software enabling a software-defined storage environment may also provide policy management for features such as data deduplication, replication, thin provisioning, snapshots and backup.
Absoft Fortran Compilers are set of Fortran compilers for Microsoft Windows, Apple Macintosh, and Linux produced by Absoft Corporation. The compilers are source code compatible across platforms.
The Aphelion Imaging Software Suite is a software suite that includes three base products - Aphelion Lab, Aphelion Dev, and Aphelion SDK for addressing image processing and image analysis applications. The suite also includes a set of extension programs to implement specific vertical applications that benefit from imaging techniques.
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