RhoBTB

Last updated
Rho-related BTB domain containing 1
Identifiers
Symbol RHOBTB1
NCBI gene 9886
HGNC 18738
OMIM 607351
RefSeq NM_014836
UniProt O94844
Other data
Locus Chr. 10 q22.1
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Structures Swiss-model
Domains InterPro
Rho-related BTB domain containing 2
Identifiers
Symbol RHOBTB2
NCBI gene 23221
HGNC 18756
OMIM 607352
RefSeq NM_001160036
UniProt Q9BYZ6
Other data
Locus Chr. 8 p21.2
Search for
Structures Swiss-model
Domains InterPro
Rho-related BTB domain containing 3
Identifiers
Symbol RHOBTB3
NCBI gene 22836
HGNC 18757
OMIM 607353
RefSeq NM_014899
UniProt O94955
Other data
Locus Chr. 5 q15
Search for
Structures Swiss-model
Domains InterPro

The RhoBTB family is a subgroup of the Rho family of small GTPases. They are a highly divergent class and are all characterized by an N-terminal Rho-related domain followed by at least one C-terminal BTB domain.

Contents

Discovery

The RhoBTB family of molecules was unknowingly discovered in 1993 by analyzing the Dictyostelium genome looking for members of the Ras superfamily of GTPases. The authors began by doing Southern blots looking for cDNAs that cross-hybridize with a very conservative probe from hRas. [1] They identified 19 new genes that belonged to the Ras superfamily and sequenced approximately 600 nucleotides from the start of the transcript. [1] If they were looking for a normal Ras-like GTPase, this would have been sufficient. One of their clones, they called RacA, was more divergent than most of the others and the transcript didn’t terminate in a stop codon like the rest. [1] The authors, however, didn’t comment on this and RhoBTB went undiscovered for another eight years.

A very careful analysis by Francisco Rivero and coworkers ensued to find all of the Rho GTPases in Dictyostelium. During their endeavor, they found that the open reading frame of RacA was actually 400 amino acids longer than what Bush had published 8 years earlier. [2] Instead of a 168 amino acid protein, RacA encoded a 598 residue protein with a Rho GTPase domain at the N-terminus and two BTB domains toward the C-terminus. BTB (Broad-Complex, Tramtrack and Bric-a-Brac) domains are known to involve hetero and homo associations with other BTB domain-containing proteins. [3] [4] Because this novel RhoBTB protein was in Dictostelium, the authors were curious if any homologous proteins exist in humans. They found three and called them RhoBTB1, RhoBTB2, and RhoBTB3. [2]

Localization and expression

RhoBTB1 and RhoBTB2 are much more homologous than RhoBTB3. [2] Further analysis revealed that the intron-exon structure of RhoBTB1 and 2 are also quite similar and have only one common intron with RhoBTB3. [5]

RhoBTB1 and 2 were not detected during mouse development, but RhoBTB3 was detected strongly between embryonic days 11.5 through 17.5. [5] Additionally, RhoBTB1 and 2 are localized to vesicular structures, [6] while RhoBTB3 is localized to the trans-Golgi network. [7]

Related Research Articles

<span class="mw-page-title-main">Ras GTPase</span> GTP-binding proteins functioning on cell-cycle regulation

Ras, from "Rat sarcoma virus", is a family of related proteins that are expressed in all animal cell lineages and organs. All Ras protein family members belong to a class of protein called small GTPase, and are involved in transmitting signals within cells. Ras is the prototypical member of the Ras superfamily of proteins, which are all related in three-dimensional structure and regulate diverse cell behaviours.

<span class="mw-page-title-main">Guanine nucleotide exchange factor</span> Proteins which remove GDP from GTPases

Guanine nucleotide exchange factors (GEFs) are proteins or protein domains that activate monomeric GTPases by stimulating the release of guanosine diphosphate (GDP) to allow binding of guanosine triphosphate (GTP). A variety of unrelated structural domains have been shown to exhibit guanine nucleotide exchange activity. Some GEFs can activate multiple GTPases while others are specific to a single GTPase.

The Rho family of GTPases is a family of small signaling G proteins, and is a subfamily of the Ras superfamily. The members of the Rho GTPase family have been shown to regulate many aspects of intracellular actin dynamics, and are found in all eukaryotic kingdoms, including yeasts and some plants. Three members of the family have been studied in detail: Cdc42, Rac1, and RhoA. All G proteins are "molecular switches", and Rho proteins play a role in organelle development, cytoskeletal dynamics, cell movement, and other common cellular functions.

<span class="mw-page-title-main">RHOB</span>

Ras homolog gene family, member B, also known as RHOB, is a protein which in humans is encoded by the RHOB gene.

<span class="mw-page-title-main">Zinc finger and BTB domain-containing protein 16</span> Protein-coding gene in the species Homo sapiens

Zinc finger and BTB domain-containing protein 16 is a protein that in humans is encoded by the ZBTB16 gene.

<span class="mw-page-title-main">RAC3</span> Mammalian protein found in Homo sapiens

Ras-related C3 botulinum toxin substrate 3 (Rac3) is a G protein that in humans is encoded by the RAC3 gene. It is an important component of intracellular signalling pathways. Rac3 is a member of the Rac subfamily of the Rho family of small G proteins. Members of this superfamily appear to regulate a diverse array of cellular events, including the control of cell growth, cytoskeletal reorganization, and the activation of protein kinases.

<span class="mw-page-title-main">RAC2</span>

Rac2 is a small signaling G protein, and is a member of the Rac subfamily of the family Rho family of GTPases. It is encoded by the gene RAC2.

<span class="mw-page-title-main">Perilipin-3</span> Protein-coding gene in the species Homo sapiens

Mannose-6-phosphate receptor binding protein 1 (M6PRBP1) is a protein which in humans is encoded by the M6PRBP1 gene. Its gene product, as well as the gene itself, is commonly known as TIP47.

<span class="mw-page-title-main">Chimerin 2</span> Protein-coding gene in the species Homo sapiens

Chimerin 2 (beta-chimaerin) is a protein that in humans is encoded by the CHN2 gene.

<span class="mw-page-title-main">RhoG</span>

RhoG is a small monomeric GTP-binding protein, and is an important component of many intracellular signalling pathways. It is a member of the Rac subfamily of the Rho family of small G proteins and is encoded by the gene RHOG.

<span class="mw-page-title-main">ARHGAP4</span> Protein-coding gene in the species Homo sapiens

Rho GTPase-activating protein 4 is an enzyme that in humans is encoded by the ARHGAP4 gene. It has been shown to regulate cell motility and axonal outgrowth in vitro.

<span class="mw-page-title-main">RICS (gene)</span> Protein-coding gene in the species Homo sapiens

Rho GTPase-activating protein 32 is a protein that in humans is encoded by the RICS gene. RICS has two known isoforms, RICS that are expressed primarily at neurite growth cones, and at the post synaptic membranes, and PX-RICS which is more widely expressed in the endoplasmic reticulum, Golgi apparatus and endosomes. The only known domain of the RICS is the RhoGAP domain, whilst PX-RICS has an additional Phox homology and SH3 domain.

<span class="mw-page-title-main">TBC1D3</span>

TBC1 domain family member 3E/3F is a protein that in humans is encoded by the TBC1D3F gene.

<span class="mw-page-title-main">RHOBTB2</span> Protein-coding gene in the species Homo sapiens

Rho-related BTB domain-containing protein 2 is a protein that in humans is encoded by the RHOBTB2 gene.

<span class="mw-page-title-main">RHOBTB3</span> Protein-coding gene in the species Homo sapiens

Rho-related BTB domain-containing protein 3 is a protein that in humans is encoded by the RHOBTB3 gene.

<span class="mw-page-title-main">RHOBTB1</span> Protein-coding gene in the species Homo sapiens

Rho-related BTB domain-containing protein 1 is a protein that in humans is encoded by the RHOBTB1 gene.

Coronin is an actin binding protein which also interacts with microtubules and in some cell types is associated with phagocytosis. Coronin proteins are expressed in a large number of eukaryotic organisms from yeast to humans.

<span class="mw-page-title-main">BTB/POZ domain</span>

The BTB/POZ domain is a common structural domain contained within some proteins.

<span class="mw-page-title-main">Abr, rhogef and gtpase activating protein</span> Protein-coding gene in the species Homo sapiens

ABR, RhoGEF and GTPase activating protein is a protein that in humans is encoded by the ABR gene.

<span class="mw-page-title-main">RAB2B</span>

Ras-related protein Rab-2B is a protein that in humans is encoded by the RAB2B gene.

References

  1. 1 2 3 Bush J, Franek K, Cardelli J (December 1993). "Cloning and characterization of seven novel Dictyostelium discoideum rac-related genes belonging to the rho family of GTPases". Gene. 136 (1–2): 61–8. doi:10.1016/0378-1119(93)90448-C. PMID   8294042.
  2. 1 2 3 Rivero F, Dislich H, Glöckner G, Noegel AA (March 2001). "The Dictyostelium discoideum family of Rho-related proteins". Nucleic Acids Res. 29 (5): 1068–79. doi:10.1093/nar/29.5.1068. PMC   29714 . PMID   11222756.
  3. Zollman S, Godt D, Privé GG, Couderc JL, Laski FA (October 1994). "The BTB domain, found primarily in zinc finger proteins, defines an evolutionarily conserved family that includes several developmentally regulated genes in Drosophila". Proc. Natl. Acad. Sci. U.S.A. 91 (22): 10717–21. Bibcode:1994PNAS...9110717Z. doi: 10.1073/pnas.91.22.10717 . PMC   45093 . PMID   7938017.
  4. Ahmad KF, Engel CK, Privé GG (October 1998). "Crystal structure of the BTB domain from PLZF". Proc. Natl. Acad. Sci. U.S.A. 95 (21): 12123–8. Bibcode:1998PNAS...9512123A. doi: 10.1073/pnas.95.21.12123 . PMC   22795 . PMID   9770450.
  5. 1 2 Ramos S, Khademi F, Somesh BP, Rivero F (October 2002). "Genomic organization and expression profile of the small GTPases of the RhoBTB family in human and mouse". Gene. 298 (2): 147–57. doi:10.1016/S0378-1119(02)00980-0. PMID   12426103.
  6. Aspenström P, Fransson A, Saras J (January 2004). "Rho GTPases have diverse effects on the organization of the actin filament system". Biochem. J. 377 (Pt 2): 327–37. doi:10.1042/BJ20031041. PMC   1223866 . PMID   14521508.
  7. Espinosa EJ, Calero M, Sridevi K, Pfeffer SR (May 2009). "RhoBTB3: A Rho GTPase-family ATPase required for endosome to Golgi transport". Cell. 137 (5): 938–48. doi:10.1016/j.cell.2009.03.043. PMC   2801561 . PMID   19490898.