Developer(s) | ISTI - CNR |
---|---|
Stable release | 2024.10.29 / October 29, 2024 [1] |
Written in | python |
Operating system | Cross-platform |
Type | Graphics software |
License | GPL |
Website | taglab |
TagLab is an interactive open source software system for facilitating the precise annotation of benthic species in orthophoto of the bottom of the sea. TagLab can automatically extract statistical informations about the evolution of monitored species and it segments large images using CNN-based algorithms. [2]
TagLab used also for the monitoring of the health of coral reefs, in order to quantify over large orthophotos of the seabed the extent of coral bleaching events. [3] Notable users of TagLab are MOTE Marine Laboratory, [4] the Hawaiʻi Institute of Marine Biology, [5] National Oceanic and Atmospheric Administration, [6] and Scripps Institution of Oceanography. [7]
TagLab is listed as one of the main tools for the standard operating procedures for the use of large-area imaging in tropical shallow water coral reef monitoring, research, and restoration. [8]
TagLab has won the 2023 VRVis Visual Computing Award for being "an open-source software solution that mitigates technological disparities between labs and promotes shared data standards and protocols". [9]
A coral reef is an underwater ecosystem characterized by reef-building corals. Reefs are formed of colonies of coral polyps held together by calcium carbonate. Most coral reefs are built from stony corals, whose polyps cluster in groups.
Coral bleaching is the process when corals become white due to loss of symbiotic algae and photosynthetic pigments. This loss of pigment can be caused by various stressors, such as changes in temperature, light, or nutrients. Bleaching occurs when coral polyps expel the zooxanthellae that live inside their tissue, causing the coral to turn white. The zooxanthellae are photosynthetic, and as the water temperature rises, they begin to produce reactive oxygen species. This is toxic to the coral, so the coral expels the zooxanthellae. Since the zooxanthellae produce the majority of coral colouration, the coral tissue becomes transparent, revealing the coral skeleton made of calcium carbonate. Most bleached corals appear bright white, but some are blue, yellow, or pink due to pigment proteins in the coral.
Southeast Asian coral reefs have the highest levels of biodiversity for the world's marine ecosystems. They serve many functions, such as forming the livelihood for subsistence fishermen and even function as jewelry and construction materials. Corals inhabit coastal waters off of every continent except Antarctica, with an abundance of reefs residing along Southeast Asian coastline in several countries including Indonesia, the Philippines, and Thailand. Coral reefs are developed by the carbonate-based skeletons of a variety of animals and algae. Slowly and over time, the reefs build up to the surface in oceans. Coral reefs are found in shallow, warm salt water. The sunlight filters through clear water and allows microscopic organisms to live and reproduce. Coral reefs are actually composed of tiny, fragile animals known as coral polyps. Coral reefs are significantly important because of the biodiversity. Although the number of fish are decreasing, the remaining coral reefs contain more unique sea creatures. The variety of species living on a coral reef is greater than anywhere else in the world. An estimation of 70-90% of fish caught are dependent on coral reefs in Southeast Asia and reefs support over 25% of all known marine species.
Mote Marine Laboratory is an independent, nonprofit, marine research organization based on City Island in Sarasota, Florida, with additional campuses in eastern Sarasota County, Boca Grande, Florida, and the Florida Keys. Founded in 1955 by Eugenie Clark in Placida, Florida, it was known as the Cape Haze Marine Laboratory until 1967. The laboratory aims to advance marine science and education, supporting conservation and sustainable use of marine resources. A public aquarium and associated education program interpret its research for the public.
The staghorn coral is a branching, stony coral, within the Order Scleractinia. It is characterized by thick, upright branches which can grow in excess of 2 meters in height and resemble the antlers of a stag, hence the name, Staghorn. It grows within various areas of a reef but is most commonly found within shallow fore and back reefs, as well as patch reefs, where water depths rarely exceed 20 meters. Staghorn corals can exhibit very fast growth, adding up to 5 cm in new skeleton for every 1 cm of existing skeleton each year, making them one of the fastest growing fringe coral species in the Western Atlantic. Due to this fast growth, Acropora cervicornis, serve as one of the most important reef building corals, functioning as marine nurseries for juvenile fish, buffer zones for erosion and storms, and center points of biodiversity in the Western Atlantic.
Rugosity, fr, is a measure of small-scale variations of amplitude in the height of a surface,
The Fungiidae are a family of Cnidaria, commonly known as mushroom corals or plate corals. The family contains thirteen extant genera. They range from solitary corals to colonial species. Some genera such as Cycloseris and Fungia are solitary organisms, Polyphyllia consists of a single organism with multiple mouths, and Ctenactis and Herpolitha might be considered as solitary organisms with multiple mouths or a colony of individuals, each with its separate mouth.
The giant barrel sponge is the largest species of sponge found growing on Caribbean coral reefs. It is common at depths greater than 10 metres (33 ft) down to 120 metres (390 ft) and can reach a diameter of 1.8 metres. It is typically brownish-red to brownish-gray in color, with a hard or stony texture.
Watamu Marine National Park and Reserve is located in Kenya. Established in 1968, it was one of Kenya's first marine parks. It is located about 90 miles (140 km) north of Mombasa, Kenya's second largest city. Its coral gardens are 300 metres (980 ft) from the shore and are home to approximately 600 species of fish, 110 species of stony coral and countless invertebrates, crustaceans and molluscs. Water temperature varies from 20 degrees Celsius to 30 degrees Celsius. The park was designated as a biosphere reserve in 1979.
Coral reef protection is the process of modifying human activities to avoid damage to healthy coral reefs and to help damaged reefs recover. The key strategies used in reef protection include defining measurable goals and introducing active management and community involvement to reduce stressors that damage reef health. One management technique is to create Marine Protected Areas (MPAs) that directly limit human activities such as fishing.
The Phoenix Islands Protected Area (PIPA) is located in the Republic of Kiribati, an ocean nation in the central Pacific approximately midway between Australia and Hawaii. PIPA constitutes 11.34% of Kiribati's exclusive economic zone (EEZ), and with a size of 408,250 km2 (157,630 sq mi), it is one of the largest marine protected areas (MPA) and one of the largest protected areas of any type on Earth. The PIPA was also designated as the world's largest and deepest UNESCO World Heritage Site in 2010.
Sean Anderson is an American conservation biologist, restoration ecologist and professor of Environmental Science and Resource Management (ESRM) at California State University Channel Islands (CSUCI). He was educated at the University of California Santa Barbara, University of California Los Angeles and Stanford University. Anderson embraces education and research alike, managing projects from California to Oceania and the Middle East. His lab, named "PIRatE Lab", conducts a wide range of coastal monitoring, ecological restoration, and conservation efforts.
Ocean acidification threatens the Great Barrier Reef by reducing the viability and strength of coral reefs. The Great Barrier Reef, considered one of the seven natural wonders of the world and a biodiversity hotspot, is located in Australia. Similar to other coral reefs, it is experiencing degradation due to ocean acidification. Ocean acidification results from a rise in atmospheric carbon dioxide, which is taken up by the ocean. This process can increase sea surface temperature, decrease aragonite, and lower the pH of the ocean. The more humanity consumes fossil fuels, the more the ocean absorbs released CO₂, furthering ocean acidification.
Ruth Deborah Gates was the Director of the Hawaiʻi Institute of Marine Biology and the first woman to be President of the International Society for Reef Studies. Her research was dedicated to understanding coral reef ecosystems, specifically coral-algal symbiosis and the capacity for corals to acclimatize under future climate change conditions. Doctor Gates is most accredited with looking at coral biology and human-assisted coral evolution, known as super corals, as notably seen in the documentary Chasing Coral, available on Netflix.
Coral Reef Conservation Program (CRCP) is a partnership between National Oceanic and Atmospheric Administration (NOAA) agencies, established in 2000. The program is a multidisciplinary approach, initiated by the NOAA, to managing and understanding coral reef ecosystems through research and the publication of data to support relevant partners involved in coral reef restoration.
The environmental impact of recreational diving is the effects of recreational scuba diving on the underwater environment, which is largely the effects of diving tourism on the marine environment. It is not uncommon for highly trafficked dive destinations to have more adverse effects with visible signs of diving's negative impacts due in large part to divers who have not been trained to sufficient competence in the skills required for the local environment, an inadequate pre-dive orientation, or lack of a basic understanding of biodiversity and the delicate balance of aquatic ecosystems. There may also be indirect positive effects as the environment is recognised by the local communities to be worth more in good condition than degraded by inappropriate use, and conservation efforts get support from dive communities who promote environmental awareness, and teach low impact diving and the importance of respecting marine life. There are also global coral reef monitoring networks in place which include local volunteer divers assisting in the collection of data for scientific monitoring of coral reef systems, which may eventually have a net positive impact on the environment.
Kristen Marhaver is a marine biologist studying coral reefs and specializing in coral ecology, reproduction, and conservation. Marhaver is a senior scientist at CARMABI Marine Research Station. Marhaver was part of the group of scientists that successfully used frozen Elkhorn coral sperm to fertilize live coral eggs to raise the first lab-reared juveniles in nurseries. Some of the sperm and eggs were from geographically isolated corals of the same species. Their success allows for the possibility of breeding corals to be more resistant to increasing ocean water temperatures by breeding corals that already survive at warmer temperatures with those that live at colder temperatures.
An electric reef is an artificial reef made from biorock, being limestone that forms rapidly in seawater on a metal structure from dissolved minerals in the presence of a small electric current. The first reefs of this type were created by Wolf Hilbertz and Thomas J. Goreau in the 1980s. By 2011 there were examples in over 20 countries.
Piti Bomb Holes Marine Preserve is a marine protected area comprising all of Piti Bay on the western coast of Guam, located off of the village of Piti in the Philippine Sea. The defining "bomb hole" features, named because they look like bomb craters in the reef flat, are actually natural percolation pits where fresh water filters into the shallow lagoon at a depth of 25 to 30 feet. The largest pit houses the commercial Fish Eye Marine Park tourist attraction, which includes a wooden pier to a underwater observatory and a Seawalker tour of the lagoon bottom. It is visited by more than 200,000 people annually. The Piti preserve is the most ecologically diverse of Guam's five marine preserves. The pit around Fish Eye is a popular snorkeling and recreational diving site.
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