Domestication syndrome

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Reduction in size is regarded as a domestication syndrome trait - grey wolf skull compared with a chihuahua skull Unnatural selection, 2 heads, one species.jpg
Reduction in size is regarded as a domestication syndrome trait - grey wolf skull compared with a chihuahua skull

Domestication syndrome refers to two sets of phenotypic traits that are common to either domesticated animals, or domesticated plants. [1] These traits were identified by Charles Darwin in The Variation of Animals and Plants Under Domestication.

Contents

Domesticated animals tend to be smaller and less aggressive than their wild counterparts, they may also have floppy ears, variations to coat color, a smaller brain, and a shorter muzzle. [2] Other traits may include changes in the endocrine system and an extended breeding cycle.

Research suggests that modified neural crest cells are potentially responsible for the traits that are common across many domesticated animal species.

The process of plant domestication has produced changes in shattering/fruit abscission, shorter height, larger grain or fruit size, easier threshing, synchronous flowering, and increased yield, as well as changes in color, taste, and texture.

Origin

In ten publications on domestication syndrome in animals, no single trait is included in every one. Traits Defining Domestication Syndrome.jpg
In ten publications on domestication syndrome in animals, no single trait is included in every one.

Charles Darwin's study of The Variation of Animals and Plants Under Domestication in 1868 identified behavioral, morphological, and physiological traits that are shared by domestic animals, but not by their wild ancestors. These shared traits became known as the domestication syndrome. [4] These traits include tameness, docility, floppy ears, altered tails, novel coat colors and patterns, reduced brain size, reduced body mass and smaller teeth. [4] [5] Other traits include changes in craniofacial morphology, alterations to the endocrine system, and changes to the female estrous cycles including the ability to breed all year-round. [5]

A recent hypothesis suggests that neural crest cell behaviour may be modified by domestication, which then leads to those traits that are common across many domesticated animal species. [2]

Cause

Many similar traits – both in animals and plants – are produced by orthologs, however whether this is true for domestication traits or merely for wild forms is less clear. Especially in the case of crops, doubt has been cast because some domestication traits have been found to result from unrelated loci. [6] In 2018, a study identified 429 genes that differed between modern dogs and modern wolves. As the differences in these genes could also be found in ancient dog fossils, these were regarded as being the result of the initial domestication and not from recent breed formation. These genes are linked to neural crest and central nervous system development. These genes affect embryogenesis and can confer tameness, smaller jaws, floppy ears, and diminished craniofacial development, which distinguish domesticated dogs from wolves and are considered to reflect domestication syndrome. The study proposes that domestication syndrome is caused by alterations in the migration or activity of neural crest cells during their development. The study concluded that during early dog domestication, the initial selection was for behavior. This trait is influenced by those genes which act in the neural crest, which led to the phenotypes observed in modern dogs. [7]

In animals

A dog's cranium is 15% smaller than an equally heavy wolf's, and the dog is less aggressive and more playful. Other species pairs show similar differences. Bonobos, like chimpanzees, are a close genetic cousin to humans, but unlike the chimpanzees, bonobos are not aggressive and do not participate in lethal inter-group aggression or kill within their own group. The most distinctive features of a bonobo are its cranium, which is 15% smaller than a chimpanzee's, and its less aggressive and more playful behavior. In other examples, the guinea pig's cranium is 13% smaller than its wild cousin the cavy, and domestic fowl show a similar reduction to their wild cousins. Possession of a smaller cranium for holding a smaller brain is a telltale sign of domestication. Bonobos appear to have domesticated themselves. [8] :104 In the farm fox experiment, humans selectively bred foxes against aggression, causing domestication syndrome. The foxes were not selectively bred for smaller craniums and teeth, floppy ears, or skills at using human gestures, but these traits were demonstrated in the friendly foxes. Natural selection favors those that are the most successful at reproducing, not the most aggressive. Selection against aggression made possible the ability to cooperate and communicate among foxes, dogs and bonobos. [8] :114 [9] The more docile animals have been found to have less testosterone than their more aggressive counterparts, and testosterone controls aggression and brain size. [10] The further away a dog breed is genetically from wolves, the larger the relative brain size is. [11]

Challenge

The domestication syndrome was reported to have appeared in the domesticated silver fox cultivated by Dmitry Belyayev's breeding experiment. [2] However, in 2015 canine researcher Raymond Coppinger found historical evidence that Belyayev's foxes originated in fox farms on Prince Edward Island and had been bred there for fur farming since the 1800s, and that the traits demonstrated by Belyayev had occurred in the foxes prior to the breeding experiment. [12] A 2019 opinion paper by Lord and colleagues argued that the results of the "Russian farm fox experiment" were overstated. [3] However, the pre-domesticated origins of the Russian farmed foxes were already a matter of public record. [13]

In 2020, Wright et al. [14] argued Lord et al.'s work refuted only a narrow and unrealistic definition of domestication syndrome because they assumed it is caused by genetic pleiotropy and arises in response to 'selection for tameness'. In the same year, Zeder pointed out that it makes no sense to deny the existence of domestication syndrome on the basis that domestication syndrome traits were present in the pre-domesticated founding foxes. [15]

The hypothesis that neural crest genes underlie some of the phenotypic differences between domestic and wild horses and dogs is supported by the functional enrichment of candidate genes under selection. [2]

In plants

Syndrome traits

The same concept appears in the plant domestication process which produces crops, but with its own set of syndrome traits. In cereals, these include little to no shattering [1] /fruit abscission, [6] shorter height (thus decreased lodging), larger grain [1] or fruit [6] size, easier threshing, synchronous flowering, altered timing of flowering, increased grain weight, [1] glutinousness (stickiness, not gluten protein content), [6] [1] increased fruit/grain number, altered color compounds, taste, and texture, daylength independence, determinate growth, lesser/no vernalization, less seed dormancy. [6]

Cereal genes by trait

Control of the syndrome traits in cereals is by:

Shattering
Plant height
Grain size
Yield
Threshability
Flowering time
Grain weight
Glutinousness
Determinate growth
Standability
Grain/fruit number
Panicle size
Spike number
Fragrance
Delayed sprouting
Altered color
Unspecified trait

Many of these are mutations in regulatory genes, especially transcription factors, which is likely why they work so well in domestication: They are not new, and are relatively ready to have their magnitudes altered. In annual grains, loss of function and altered expression are by far the most common, and thus are the most interesting goals of mutation breeding, while copy number variation and chromosomal rearrangements are far less common. [1]

See also

Related Research Articles

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<span class="mw-page-title-main">Domestication</span> Selective breeding of plants and animals to serve humans

Domestication is a multi-generational mutualistic relationship between humans and other organisms, in which humans take over control and care to obtain a steady supply of resources including food. The process was gradual and geographically diffuse, based on trial and error.

Dwarfing is a process in which a breed of animals or cultivar of plants is changed to become significantly smaller than standard members of their species. The effect can be induced through human intervention or non-human processes, and can include genetic, nutritional or hormonal means. Used most specifically, dwarfing includes pathogenic changes in the structure of an organism, in contrast to non-pathogenic proportional reduction in stature.

Heterosis, hybrid vigor, or outbreeding enhancement is the improved or increased function of any biological quality in a hybrid offspring. An offspring is heterotic if its traits are enhanced as a result of mixing the genetic contributions of its parents. The heterotic offspring often has traits that are more than the simple addition of the parents' traits, and can be explained by Mendelian or non-Mendelian inheritance. Typical heterotic/hybrid traits of interest in agriculture are higher yield, quicker maturity, stability, drought tolerance etc.

<span class="mw-page-title-main">Domesticated silver fox</span> Type of fox

The domesticated silver fox is a form of the silver fox that has been to some extent domesticated under laboratory conditions. The silver fox is a melanistic form of the wild red fox. Domesticated silver foxes are the result of an experiment designed to demonstrate the power of selective breeding to transform species, as described by Charles Darwin in On the Origin of Species. The experiment at the Institute of Cytology and Genetics in Novosibirsk, Russia explored whether selection for behaviour rather than morphology may have been the process that had produced dogs from wolves, by recording the changes in foxes when in each generation only the most tame foxes were allowed to breed. Many of the descendant foxes became both tamer and more dog-like in morphology, including displaying mottled- or spotted-coloured fur.

<span class="mw-page-title-main">Domestication of vertebrates</span> Overview of animal domestication

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<span class="mw-page-title-main">History of agriculture</span>

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Dmitry Konstantinovich Belyayev was a Soviet geneticist and academician who served as director of the Institute of Cytology and Genetics (IC&G) of the USSR Academy of Sciences, Novosibirsk, from 1959 to 1985. His decades-long effort to breed domesticated silver foxes was described by The New York Times as “arguably the most extraordinary breeding experiment ever conducted.” A 2010 article in Scientific American stated that Belyayev “may be the man most responsible for our understanding of the process by which wolves were domesticated into our canine companions.”

<span class="mw-page-title-main">Common wheat</span> Species of plant

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<span class="mw-page-title-main">Self-domestication</span> Scientific hypothesis in ethnobiology


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<span class="mw-page-title-main">Barley</span> Cereal grain

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<span class="mw-page-title-main">Maize</span> Genus of grass cultivated as a food crop

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References

  1. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 Kantar, Michael B.; Tyl, Catrin E.; Dorn, Kevin M.; Zhang, Xiaofei; Jungers, Jacob M.; Kaser, Joe M.; Schendel, Rachel R.; Eckberg, James O.; Runck, Bryan C.; Bunzel, Mirko; Jordan, Nick R.; Stupar, Robert M.; Marks, M. David; Anderson, James A.; Johnson, Gregg A.; Sheaffer, Craig C.; Schoenfuss, Tonya C.; Ismail, Baraem; Heimpel, George E.; Wyse, Donald L. (2016-04-29). "Perennial Grain and Oilseed Crops". Annual Review of Plant Biology . Annual Reviews. 67 (1): 703–29. doi:10.1146/annurev-arplant-043015-112311. ISSN   1543-5008. PMID   26789233.:708
  2. 1 2 3 4 Frantz, Laurent A. F.; Bradley, Daniel G.; Larson, Greger; Orlando, Ludovic (2020). "Animal domestication in the era of ancient genomics". Nature Reviews Genetics. 21 (8): 449–460. doi:10.1038/s41576-020-0225-0. PMID   32265525. S2CID   214809393.
  3. 1 2 Lord, Kathryn A.; Larson, Greger; Coppinger, Raymond P.; Karlsson, Elinor K. (2020). "The History of Farm Foxes Undermines the Animal Domestication Syndrome". Trends in Ecology & Evolution. 35 (2): 125–136. doi: 10.1016/j.tree.2019.10.011 . PMID   31810775.
  4. 1 2 Irving-Pease, Evan K.; Ryan, Hannah; Jamieson, Alexandra; Dimopoulos, Evangelos A.; Larson, Greger; Frantz, Laurent A. F. (2018). "Paleogenomics of Animal Domestication". In Lindqvist, C.; Rajora, O. (eds.). Paleogenomics. Population Genomics. Springer, Cham. pp. 225–272. doi:10.1007/13836_2018_55. ISBN   978-3-030-04752-8.
  5. 1 2 Machugh, David E.; Larson, Greger; Orlando, Ludovic (2016). "Taming the Past: Ancient DNA and the Study of Animal Domestication". Annual Review of Animal Biosciences. 5: 329–351. doi:10.1146/annurev-animal-022516-022747. PMID   27813680.
  6. 1 2 3 4 5 6 7 8 9 10 11 12 Lenser, Teresa; Theißen, Günter (2013). "Molecular mechanisms involved in convergent crop domestication". Trends in Plant Science . Cell Press. 18 (12): 704–714. doi:10.1016/j.tplants.2013.08.007. ISSN   1360-1385. PMID   24035234.
  7. Pendleton, Amanda L.; Shen, Feichen; Taravella, Angela M.; Emery, Sarah; Veeramah, Krishna R.; Boyko, Adam R.; Kidd, Jeffrey M. (2018). "Comparison of village dog and wolf genomes highlights the role of the neural crest in dog domestication". BMC Biology. 16 (1): 64. doi:10.1186/s12915-018-0535-2. PMC   6022502 . PMID   29950181.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  8. 1 2 Hare, Brian (2013). The Genius of Dogs. Penguin Publishing Group.
  9. Hare, Brian (2005). "Human-like social skills in dogs?". Trends in Cognitive Sciences. 9 (9): 439–44. doi:10.1016/j.tics.2005.07.003. PMID   16061417. S2CID   9311402.
  10. Bruce Hood (psychologist) (2014). The Domesticated Brain. Pelican. ISBN   9780141974866.Preface
  11. Study finds the brains of modern dog breeds are larger than those of ancient breeds
  12. Gorman, James (2019-12-03). "Why Are These Foxes Tame? Maybe They Weren't So Wild to Begin With". The New York Times . Retrieved 2020-11-18.
  13. Statham, Mark J.; Trut, Lyudmila N.; Sacks, Ben N.; Kharlamova, Anastasiya V.; Oskina, Irina N.; Gulevich, Rimma G.; Johnson, Jennifer L.; Temnykh, Svetlana V.; Acland, Gregory M.; Kukekova, Anna V. (May 2011). "On the origin of a domesticated species: identifying the parent population of Russian silver foxes (Vulpes vulpes): THE ORIGIN OF RUSSIAN SILVER FOXES". Biological Journal of the Linnean Society. 103 (1): 168–175. doi:10.1111/j.1095-8312.2011.01629.x. PMC   3101803 . PMID   21625363.
  14. Wright, Dominic; Henriksen, Rie; Johnsson, Martin (December 2020). "Defining the Domestication Syndrome: Comment on Lord et al. 2020". Trends in Ecology & Evolution. 35 (12): 1059–1060. doi:10.1016/j.tree.2020.08.009. PMID   32917395. S2CID   221636622.
  15. Zeder, Melinda A. (August 2020). "Straw Foxes: Domestication Syndrome Evaluation Comes Up Short". Trends in Ecology & Evolution. 35 (8): 647–649. doi:10.1016/j.tree.2020.03.001. PMID   32668211. S2CID   216513400.
  16. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 Chen, Erwang; Huang, Xuehui; Tian, Zhixi; Wing, Rod A.; Han, Bin (2019-04-29). "The Genomics of Oryza Species Provides Insights into Rice Domestication and Heterosis". Annual Review of Plant Biology . Annual Reviews. 70 (1): 639–665. doi:10.1146/annurev-arplant-050718-100320. ISSN   1543-5008. PMID   31035826. S2CID   140266038.
  17. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 Chen, Kunling; Wang, Yanpeng; Zhang, Rui; Zhang, Huawei; Gao, Caixia (2019-04-29). "CRISPR/Cas Genome Editing and Precision Plant Breeding in Agriculture". Annual Review of Plant Biology. Annual Reviews. 70 (1): 667–697. doi: 10.1146/annurev-arplant-050718-100049 . ISSN   1543-5008. PMID   30835493. S2CID   73471425.
  18. Pearce, Stephen; Saville, Robert; Vaughan, Simon P.; Chandler, Peter M.; Wilhelm, Edward P.; Sparks, Caroline A.; Al-Kaff, Nadia; Korolev, Andrey; Boulton, Margaret I.; Phillips, Andrew L.; Hedden, Peter; Nicholson, Paul; Thomas, Stephen G. (1 December 2011). "Molecular Characterization of Rht-1 Dwarfing Genes in Hexaploid Wheat". Plant Physiology. 157 (4): 1820–1831. doi: 10.1104/pp.111.183657 .
  19. Stange, Madlen; Barrett, Rowan D. H.; Hendry, Andrew P. (February 2021). "The importance of genomic variation for biodiversity, ecosystems and people". Nature Reviews Genetics . Nature Portfolio. 22 (2): 89–105. doi:10.1038/s41576-020-00288-7. ISSN   1471-0056. PMID   33067582. S2CID   223559538.
  20. Purugganan, Michael D.; Fuller, Dorian Q. (2009). "The nature of selection during plant domestication". Nature . Nature Research. 457 (7231): 843–848. Bibcode:2009Natur.457..843P. doi:10.1038/nature07895. ISSN   0028-0836. PMID   19212403. S2CID   205216444.