| Doubles | |
|---|---|
| 2006 U.S. Men's Clay Court Championships | |
| Champions |  Michael Kohlmann Alexander Waske |
| Runners-up |  Julian Knowle Jürgen Melzer |
| Final score | 5–7, 6–4, [10–5] |
Mark Knowles and Daniel Nestor were the defending champions, but lost in the first round this year.
Michael Kohlmann and Alexander Waske won in the final 5–7, 6–4, [10–5], against Julian Knowle and Jürgen Melzer.
Bob Bryan / Mike Bryan (quarterfinals)
Mark Knowles / 
Daniel Nestor (first round) Julian Knowle / Jürgen Melzer (final)
Ashley Fisher / Stephen Huss (semifinal)| First round | Quarterfinals | Semifinals | Final | ||||||||||||||||||||||||
| 1 | B Bryan M Bryan | 6 | 6 | ||||||||||||||||||||||||
| WC | T Blake P Goldstein | 3 | 4 | 1 | B Bryan M Bryan | 7 | 64 | [7] | |||||||||||||||||||
| M Kohlmann A Waske | 6 | 6 | M Kohlmann A Waske | 5 | 77 | [10] | |||||||||||||||||||||
V Spadea  J Tipsarević | 3 | 0 | M Kohlmann A Waske | 6 | 6 | ||||||||||||||||||||||
| 4 | A Fisher S Huss | 6 | 2 | [10] | 4 | A Fisher S Huss | 4 | 3 | |||||||||||||||||||
 JA Marín  A Montañés | 1 | 6 | [8] | 4 | A Fisher S Huss | w/o | |||||||||||||||||||||
 C Berlocq  P Capdeville | 3 | 6 | [2] | R Ginepri R Schüttler | |||||||||||||||||||||||
| R Ginepri R Schüttler | 6 | 4 | [10] | M Kohlmann A Waske | 5 | 6 | [10] | ||||||||||||||||||||
O Marach  G Müller | 3 | 68 | 3 | J Knowle J Melzer | 7 | 4 | [5] | ||||||||||||||||||||
| T Phillips B Reynolds | 6 | 710 | T Phillips B Reynolds | 7 | 5 | [8] | |||||||||||||||||||||
 R Lindstedt T Parrott | 5 | 6 | [6] | 3 | J Knowle J Melzer | 5 | 7 | [10] | |||||||||||||||||||
| 3 | J Knowle J Melzer | 7 | 0 | [10] | 3 | J Knowle J Melzer | 6 | 7 | |||||||||||||||||||
| Alt | T Behrend  M Daniel | 5 | 3 | WC | J Blake M Fish | 4 | 5 | ||||||||||||||||||||
| WC | J Blake M Fish | 7 | 6 | WC | J Blake M Fish | 7 | 6 | ||||||||||||||||||||
 T Cibulec I Minář | 6 | 2 | [10] | T Cibulec I Minář | 5 | 1 | |||||||||||||||||||||
| 2 | M Knowles D Nestor | 4 | 6 | [6] | |||||||||||||||||||||||
Bob and Mike Bryan were the defending champions, but lost in the third round to Leoš Friedl and Mikhail Youzhny.
First-seeded Bob Bryan and Mike Bryan defeated seventh-seeded Martin Damm and Leander Paes 4–6, 6–3, 6–4 to win the men's doubles title at the 2006 Australian Open.
Mark Knowles and Daniel Nestor were the defending champions, but lost in the first round to Lukáš Dlouhý and David Škoch.
Tomáš Berdych and Dmitry Tursunov are the defending champions. They are both present but do not compete together.
Berdych partners with Jürgen Melzer, but lost in the semifinals to Daniel Nestor and Nenad Zimonjić.
Tursunov partnered with Gilles Simon, but lost in the first round to Daniel Nestor and Nenad Zimonjić.
Max Mirnyi and Andy Ram were the defending champions, but they chose not to participate this year.
Łukasz Kubot and Oliver Marach won in the final 2–6, 6–4, [11–9] against Julian Knowle and Jürgen Melzer.
Bob and Mike Bryan were the defending champions, and successfully defended their title after winning 6–3, 6–7(5), 6–3, against Daniel Nestor and Nenad Zimonjić.
Bob and Mike Bryan, the two-time defending champions in this event, successfully defended their title. They defeated Mahesh Bhupathi and Leander Paes 6–3, 6–4 in the final.
Daniel Nestor and Nenad Zimonjić were the two-time defending champions, but lost in the second round to Chris Eaton and Dominic Inglot.
Bob Bryan and Mike Bryan won the title, defeating Julien Benneteau and Michaël Llodra 7–5, 6–3 in the final.
Daniel Nestor and Nenad Zimonjić were the defending champions, but they lost to František Čermák and Michal Mertiňák 7–5, 6–2 in the first round.
Bob Bryan and Mike Bryan won in the final against Mahesh Bhupathi and Max Mirnyi, 6–3, 6–4.
Julian Knowle and Jürgen Melzer were the defending champions, but Melzer chose not to participate this year.
As a result, Knowle partnered with Andy Ram, but they lost to Robert Lindstedt and Horia Tecău in the semifinals. Lindstedt and Tecău went on to win the tournament, after defeating Rohan Bopanna and Aisam-ul-Haq Qureshi in the final 6–4, 7–5.
Lukáš Dlouhý and Leander Paes were the defending champions, but lost in the first round to Martin Damm and Filip Polášek 6–7(7–9), 6–3, 6–4.
Daniel Nestor and Nenad Zimonjić were the defending champions, but decided not to participate together.
Zimonjić partnered up with Jürgen Melzer, while Nestor played alongside Max Mirnyi. These pairs were both eliminated by eventual champions Santiago González and Scott Lipsky, who won in the final against Bob Bryan and Mike Bryan 5–7, 6–2, [12–10].
Jürgen Melzer and Philipp Petzschner were the defending champions, but lost in the quarterfinals to Bob and Mike Bryan.
Leander Paes and Cara Black were the defending champions but lost in the quarterfinals to Daniel Nestor and Chan Yung-jan.
Bob and Mike Bryan were the defending champions, but lost in the first round to Ivo Karlović and Frank Moser. It marked the first time the Bryan brothers lost in the first round of a Grand Slam tournament since the 2001 Australian Open, a span of 42 Grand Slam tournaments, and their first opening round loss at the US Open since 1999.
Mark Knowles and Daniel Nestor were the defending champions, but did not participate this year.
Max Mirnyi and Daniel Nestor were the defending champions, but chose not to compete together. Mirnyi competed with Horia Tecău, but lost in the second round to Michaël Llodra and Nicolas Mahut, while Nestor competed with Robert Lindstedt, losing in the second round to Jonathan Dasnières de Veigy and Florent Serra.
Pierre-Hugues Herbert and Nicolas Mahut were the defending champions, but lost in the semifinals to Jamie Murray and Bruno Soares.