The four best runners-up from the first round advanced to the second round. Results against sixth-place teams were discounted due to the differing group sizes as a result of Eritrea's withdrawal.[4]
Teams were seeded based on the FIFA Men's World Ranking of 17 October 2025, shown below in brackets, with the first and second teams playing the fourth and third teams, respectively,[5][6] in a single-leg knockout round with the semi-finals on 13 November and the final on 16 November 2025. All matches were played in Morocco,[7] with a draw on 30 October 2025 determining the semi-final venue assignments.[1] The winner of the final advanced to the inter-confederation play-offs in March 2026.
If scores were level at the end of regulation, 30 minutes of extra time was played, where each team was allowed a sixth substitution. If the scores remained tied, a penalty shoot-out was used to determine the winner.[8]
A player was automatically suspended for the next match for the following offences:[8]
Receiving a red card (red card suspensions could be extended for serious offences)
Receiving two yellow cards in two different qualifying group stage matches (yellow card suspensions were carried forward to the play-off semi-finals, but not the play-off finals, World Cup final tournament or any other future international matches)
Yellow cards received during the qualifying group stage expired prior to the CAF play-offs, thus preventing suspensions in the play-off finals due to yellow cards received in the semi-finals. However, yellow card suspensions accumulated at the end of the qualifying group stage were still carried forward to the play-off semi-finals.[11]
The following suspensions were served during the second round qualifying matches:
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Gabon 
DR Congo 
Cameroon 
Nigeria 
Burkina Faso 
Niger 
Madagascar 
Uganda 
Namibia 
