Amy Charkowski | |
---|---|
Born | Amy Olymbia Charkowski January 24, 1971 (age 51) |
Alma mater | University of Wisconsin-Madison (BS) Cornell University (PhD) |
Scientific career | |
Thesis | Pseudomonas syringae HRP gene pathogenicity islands. (1998) |
Website | Charkwoski Lab |
Amy Olymbia Charkowski is an American plant pathologist and Professor of Plant Pathology at Colorado State University. She was elected Fellow of the American Association for the Advancement of Science in 2020.
Charkowski was born in Madison. [1] She stayed close to home for her undergraduate studies, focussing on biochemistry and plant pathology at the University of Wisconsin–Madison. Whilst she had long been interested in biology, it was during her undergraduate degree that she first worked in a plant virology laboratory. [2] She has recalled visiting the hydroponic farms at Epcot with her family. [2] Her first undergraduate research experience involved bean and pepper diseases. [2] After earning her bachelor's degree she moved to Cornell University, where she studied the hypersensitive response and pathogenicity system. [3] After graduating she worked at the United States Department of Agriculture research service where she worked on food safety research. [2]
After a short spell at the USDA Charkowski returned to the University of Wisconsin–Madison, where she studied how microbes manipulate plants. [2] [4] As part of her role at the University of Wisconsin–Madison, Charkowski directs the Wisconsin Seed Potato Certification program, which oversees the certification of seeds produced by farmers in Wisconsin. [2] Wisconsin growers are responsible for the production of around $16 million worth of seed potatoes planted across the United States per year, with around 8% of United States potatoes able to be traced back to the Charkowski's program. [4] Her innovations with the Wisconsin Seed Potato Certification programme include ensuring the laws surrounding seed production meet international standards, the implementation of a hydroponics programme and applying scientific programmes to detect for potato pathogens. [1] As part of these efforts, Charkowski leads the $8.3M USDA Specialty Crops Research Initiative. [4]
Charkowski has worked to understand and control the broad host range pathogens Pectobacterium and Dickeya . [5] These diseases attack potato crops in Wisconsin, causing potatoes to rot. [6] Charkowski has sequenced the genome of the Pectobacterium taxa, allowing systematic investigations into the role of the bacterial genes that are up-regulated in rotating tubers. [1]
In her investigations of the genome of Pectobacterium, Charkowski identified that the bacteria delivered a single effector protein (DspE) into host cells. [1] In plants that can recognise the effector protein, DspE can trigger a resistive response. Certain species of potato can resist the killing effects of the DspE whilst simultaneously attacking the Pectobacterium. [1] She has tried to move the defensive genes that can recognise DspE into other potatoes and crop plants as a means to destroy pathogens. [1] In 2016 Charkowski moved to Colorado State University as Professor and department chair.
Charkowski is married. She is a passionate explorer, and takes part in hiking, biking and kayaking. [2]
Erwinia is a genus of Enterobacterales bacteria containing mostly plant pathogenic species which was named for the famous plant pathologist, Erwin Frink Smith. It contains Gram-negative bacteria related to Escherichia coli, Shigella, Salmonella, and Yersinia. They are primarily rod-shaped bacteria.
Dickeya dadantii is a gram-negative bacillus that belongs to the family Pectobacteriaceae. It was formerly known as Erwinia chrysanthemi but was reassigned as Dickeya dadantii in 2005. Members of this family are facultative anaerobes, able to ferment sugars to lactic acid, have nitrate reductase, but lack oxidases. Even though many clinical pathogens are part of the order Enterobacterales, most members of this family are plant pathogens. D. dadantii is a motile, nonsporing, straight rod-shaped cell with rounded ends, much like the other members of the genus, Dickeya. Cells range in size from 0.8 to 3.2 μm by 0.5 to 0.8 μm and are surrounded by numerous flagella (peritrichous).
The gene-for-gene relationship is a concept in plant pathology that plants and their diseases each have single genes that interact with each other during an infection. It was proposed by Harold Henry Flor who was working with rust (Melampsora lini) of flax (Linum usitatissimum). Flor showed that the inheritance of both resistance in the host and parasite ability to cause disease is controlled by pairs of matching genes. One is a plant gene called the resistance (R) gene. The other is a parasite gene called the avirulence (Avr) gene. Plants producing a specific R gene product are resistant towards a pathogen that produces the corresponding Avr gene product. Gene-for-gene relationships are a widespread and very important aspect of plant disease resistance. Another example can be seen with Lactuca serriola versus Bremia lactucae.
Xanthomonas campestris is a gram-negative, obligate aerobic bacterium that is a member of the Xanthomonas genus, which is a group of bacteria that are commonly known for their association with plant disease. This species includes Xanthomonas campestris pv. campestris the cause of black rot of brassicas, one of the most important diseases of brasicas worldwide.
Pseudomonas syringae is a rod-shaped, Gram-negative bacterium with polar flagella. As a plant pathogen, it can infect a wide range of species, and exists as over 50 different pathovars, all of which are available to researchers from international culture collections such as the NCPPB, ICMP, and others.
Pseudomonas cichorii is a Gram-negative soil bacterium that is pathogenic to plants. It has a wide host range, and can have an important economical impact on lettuce, celery and chrysanthemum crops. P. cichorii was first isolated on endives, from which it derives its name. It produces 6-aminopenicillanic acid. Based on 16S rRNA analysis, P. cichorii has been placed in the P. syringae group.
Ralstonia solanacearum is an aerobic non-spore-forming, Gram-negative, plant pathogenic bacterium. R. solanacearum is soil-borne and motile with a polar flagellar tuft. It colonises the xylem, causing bacterial wilt in a very wide range of potential host plants. It is known as Granville wilt when it occurs in tobacco. Bacterial wilts of tomato, pepper, eggplant, and Irish potato caused by R. solanacearum were among the first diseases that Erwin Frink Smith proved to be caused by a bacterial pathogen. Because of its devastating lethality, R. solanacearum is now one of the more intensively studied phytopathogenic bacteria, and bacterial wilt of tomato is a model system for investigating mechanisms of pathogenesis. Ralstonia was until recently classified as Pseudomonas, with similarity in most aspects, except that it does not produce fluorescent pigment like Pseudomonas. The genomes from different strains vary from 5.5 Mb up to 6 Mb, roughly being 3.5 Mb of a chromosome and 2 Mb of a megaplasmid. While the strain GMI1000 was one of the first phytopathogenic bacteria to have its genome completed, the strain UY031 was the first R. solanacearum to have its methylome reported. Within the R. solanacearum species complex, the four major monophyletic clusters of strains are termed phylotypes, that are geographically distinct: phylotypes I-IV are found in Asia, the Americas, Africa, and Oceania, respectively.
Pectobacterium carotovorum is a bacterium of the family Pectobacteriaceae; it used to be a member of the genus Erwinia.
Fusarium solani is a species complex of at least 26 closely related filamentous fungi in the division Ascomycota, family Nectriaceae. It is the anamorph of Nectria haematococca. It is a common soil fungus and colonist of plant materials. Fusarium solani is implicated in plant diseases as well as in serious human diseases such as fungal keratitis.
Potato virus X (PVX) is a plant pathogenic virus of the family Alphaflexiviridae and the order Tymovirales.
Black rot, caused by the bacterium Xanthomonas campestris pv. campestris (Xcc), is considered the most important and most destructive disease of crucifers, infecting all cultivated varieties of brassicas worldwide. This disease was first described by botanist and entomologist Harrison Garman in Lexington, Kentucky, US in 1889. Since then, it has been found in nearly every country in which vegetable brassicas are commercially cultivated.
Bacterial soft rots are caused by several types of bacteria, but most commonly by species of gram-negative bacteria, Erwinia, Pectobacterium, and Pseudomonas. It is a destructive disease of fruits, vegetables, and ornamentals found worldwide, and affects genera from nearly all the plant families. The bacteria mainly attack the fleshy storage organs of their hosts, but they also affect succulent buds, stems, and petiole tissues. With the aid of special enzymes, the plant is turned into a liquid mush in order for the bacteria to consume the plant cell's nutrients. Disease spread can be caused by simple physical interaction between infected and healthy tissues during storage or transit. The disease can also be spread by insects. Control of the disease is not always very effective, but sanitary practices in production, storing, and processing are something that can be done in order to slow the spread of the disease and protect yields.
Dickeya solani is a bacterium that causes blackleg and soft rot in potato crops. Its symptoms are often indistinguishable from those caused by Pectobacterium but is more virulent, causing disease from lower levels of inoculum and spreading through the plant more effectively.
Pectobacterium wasabiae is a plant pathogenic bacterium that was first reported to cause disease on wasabi plants. A closely related species, yet to be formally named, also causes disease on potato. Unlike most Pectobacterium, P. wasabiae strains lack a type III secretion system. Its type strain is CFBP 3304T(=LMG 8404T =NCPPB 3701T =ICMP 9121T).
Beet vascular necrosis and rot is a soft rot disease caused by the bacterium Pectobacterium carotovorum subsp. betavasculorum, which has also been known as Pectobacterium betavasculorum and Erwinia carotovora subsp. betavasculorum. It was classified in the genus Erwinia until genetic evidence suggested that it belongs to its own group; however, the name Erwinia is still in use. As such, the disease is sometimes called Erwinia rot today. It is a very destructive disease that has been reported across the United States as well as in Egypt. Symptoms include wilting and black streaks on the leaves and petioles. It is usually not fatal to the plant, but in severe cases the beets will become hollowed and unmarketable. The bacteria is a generalist species which rots beets and other plants by secreting digestive enzymes that break down the cell wall and parenchyma tissues. The bacteria thrive in warm and wet conditions, but cannot survive long in fallow soil. However, it is able to persist for long periods of time in the rhizosphere of weeds and non-host crops. While it is difficult to eradicate, there are cultural practices that can be used to control the spread of the disease, such as avoiding injury to the plants and reducing or eliminating application of nitrogen fertilizer.
Blackleg is a plant disease of potato caused by pectolytic bacteria that can result in stunting, wilting, chlorosis of leaves, necrosis of several tissues, a decline in yield, and at times the death of the potato plant. The term "blackleg" originates from the typical blackening and decay of the lower stem portion, or "leg", of the plant.
Bacterial blight of soybean is a widespread disease of soybeans caused by Pseudomonas syringaepv. glycinea.
Steven Earl Lindow is an American plant pathologist. He has researched the application of transgenic bacteria to prevent frost damage in crops as well as using bacteria to prevent russeting of fruit. He is a member of several scientific societies, including the National Academy of Sciences, and has been co-editor of the Annual Review of Phytopathology from 2015-2023.
Caitilyn Allen is an American plant pathologist, specializing in phytobacteriology. She is an internationally recognized expert on bacterial wilt and has received several awards for her work.
Gwyn A. Beattie is the Robert Earle Buchanan Distinguished Professor of Bacteriology for Research and Nomenclature at Iowa State University, working in the areas of plant pathology and microbiology. Beattie uses molecular and cellular perspectives to examine questions about the ecology of plant bacteria such as the ways in which plant leaves respond to environmental cues, and the genomics underlying microbial responses on and within plant leaves. Her work on the microbiome and the positive influence of microbes has implications for plant health and productivity, with the potential to improve crop yields and counter food insecurity.
Charkowski's Twitter profile