Dek Woolfson

Last updated
Dek Woolfson
Born
Derek N. Woolfson

7 July, 1965
NationalityBritish
EducationUniversity of Oxford, UK University of Cambridge, UK
Known forResearch on coiled-coil proteins, de novo protein design, peptide assembly, and synthetic biology
AwardsMedimmune Protein and Peptide Science Award of the Royal Society of Chemistry, 2011.

Royal Society Wolfson Research Merit Award, 2014.

Interdisciplinary Prize of the Royal Society of Chemistry, 2016.

Humboldt Research Award, also known as the Humboldt Prize, 2020.

Contents

Scientific career
FieldsChemical biology

Protein design

Synthetic biology
InstitutionsUniversity of Bristol
Doctoral advisor Dudley Williams FRS

Derek Dek Woolfson (born 7 July 1965) is a British chemist and biochemist. He is a professor of chemistry and biochemistry. [1] [2] and director of the Bristol BioDesign Institute [3] at the University of Bristol, and founder of synthetic biology spin-out company Rosa Biotech. [4]

Early life and education

Woolfson was born on 7 July 1965 in Birmingham, UK. He attended King's Norton Boys' School (1976–1983). Woolfson was awarded a Bachelor of Science degree in chemistry from the University of Oxford in 1987, doing undergraduate research with Christopher M. Dobson. He obtained his PhD in chemistry and biochemistry from the University of Cambridge in 1991 under the supervision of Prof. D. H. Williams (chemistry) and Dr. P. A. Evans (biochemistry).

Career

Woolfson undertook post-doctoral research at University College London (1991–1992), and at the University of California, Berkeley (1992–1994), before accepting a Lectureship in Biochemistry at the University of Bristol from 1994 to 1995.

The following year, Woolfson was appointed Lecturer and later Professor of Biochemistry at the University of Sussex, where he worked until 2005. Since 2005, Woolfson has held a joint chair between the Schools of Chemistry and Biochemistry at the University of Bristol.

Woolfson was Principal Investigator and Director of the UKRI-funded Synthetic Biology Research Centre, BrisSynBio [5] at the University of Bristol. He is director of the Bristol BioDesign Institute [6] at the University of Bristol and founding director of the Max Planck-Bristol Centre for Minimal Biology. [7] [8] In 2019 he founded the spin-out company Rosa Biotech. [9]

Research

Woolfson applies chemical and physical methods and principles to understand biological phenomena, such as protein folding and stability.

He is interested in how weak non-covalent interactions determine the structures and functions of proteins; [10] [11] [12] [13] [14] and also the challenge of rational protein design and how this can be applied in synthetic biology and biotechnology. [15] [16]

Using a combination of rational and computational design, Woolfson explores making completely new protein structures and materials not known to natural biology. [17] [18] [19]

The current focuses of his group [20] are in the parametric design of protein structures, assemblies and materials; and in porting these into living cells to augment natural biology.

His work focuses on the folding, assembly, prediction, modelling and design of coiled-coil proteins. [21] [22] [23] [24] [25]

Awards and honours

Related Research Articles

Synthetic biology Interdisciplinary branch of biology and engineering

Synthetic biology (SynBio) is a multidisciplinary area of research that seeks to create new biological parts, devices, and systems, or to redesign systems that are already found in nature.

A coiled coil is a structural motif in proteins in which 2–7 alpha-helices are coiled together like the strands of a rope. Many coiled coil-type proteins are involved in important biological functions, such as the regulation of gene expression — e.g., transcription factors. Notable examples are the oncoproteins c-Fos and c-jun, as well as the muscle protein tropomyosin.

Bioinorganic chemistry is a field that examines the role of metals in biology. Bioinorganic chemistry includes the study of both natural phenomena such as the behavior of metalloproteins as well as artificially introduced metals, including those that are non-essential, in medicine and toxicology. Many biological processes such as respiration depend upon molecules that fall within the realm of inorganic chemistry. The discipline also includes the study of inorganic models or mimics that imitate the behaviour of metalloproteins.

Lubert Stryer

Lubert Stryer is the Emeritus Mrs. George A. Winzer Professor of Cell Biology, at Stanford University School of Medicine. His research over more than four decades has been centered on the interplay of light and life. In 2007 he received the National Medal of Science from President Bush at a ceremony at the White House for elucidating the biochemical basis of signal amplification in vision, pioneering the development of high density microarrays for genetic analysis, and authoring the standard undergraduate biochemistry textbook, Biochemistry. It is now in its ninth edition and also edited by Jeremy Berg, John L. Tymoczko and Gregory J. Gatto, Jr.

Ronald T. Raines

Ronald T. Raines is an American chemical biologist. He is the Roger and Georges Firmenich Professor of Natural Products Chemistry at the Massachusetts Institute of Technology. He is known for using ideas and methods of physical organic chemistry to solve important problems in biology.

Tej P. Singh Indian biophysicist (born 1944)

Tej Pal Singh is an Indian biophysicist known for his work in the fields of Rational Structure-based drug design, Protein Structure biology and X-ray crystallography. He has played an active role in the development of drug design in the fields of Antibacterial therapeutics, Tuberculosis, Inflammation, Cancer and Gastropathy.

Gideon Davies Professor of Chemistry

Gideon John Davies FRS FRSC FMedSci in the York Structural Biology Laboratory (YSBL) at the University of York, UK. Davies is best known for his ground-breaking studies into carbohydrate-active enzymes, notably analysing the conformational and mechanistic basis for catalysis and applying this for societal benefit. In 2016 Davies was made the Royal Society Ken Murray Research Professor at the University of York.

G. Marius Clore Molecular biophysicist, structural biologist

G. Marius Clore MAE, FRSC, FRS is a British-born, American molecular biophysicist and structural biologist. He was born in London, U.K. (1955) and is a dual US/U.K. Citizen. He is a Member of the National Academy of Sciences, a Fellow of the Royal Society, a NIH Distinguished Investigator, and the Chief of the Molecular and Structural Biophysics Section in the Laboratory of Chemical Physics of the National Institute of Diabetes and Digestive and Kidney Diseases at the U.S. National Institutes of Health. He is known for his foundational work in three-dimensional protein and nucleic acid structure determination by biomolecular NMR spectroscopy, for advancing experimental approaches to the study of large macromolecules and their complexes by NMR, and for developing NMR-based methods to study rare conformational states in protein-nucleic acid and protein-protein recognition. Clore's discovery of previously undetectable, functionally significant, rare transient states of macromolecules has yielded fundamental new insights into the mechanisms of important biological processes, and in particular the significance of weak interactions and the mechanisms whereby the opposing constraints of speed and specificity are optimized. Further, Clore's work opens up a new era of pharmacology and drug design as it is now possible to target structures and conformations that have been heretofore unseen.

Stephen Mann, FRS, FRSC, is Professor of Chemistry, co-director of the Max Planck Bristol Centre for Minimal Biology, director of the Centre for Organized Matter Chemistry, director of the Centre for Protolife Research, and was principal of the Bristol Centre for Functional Nanomaterials at the University of Bristol, UK.

Christopher Joseph Schofield is the Head of Organic Chemistry at the University of Oxford and a Fellow of the Royal Society. Chris Schofield is a professor of organic chemistry at the University of Oxford, Department of Chemistry and a Fellow of Hertford College. Prof Schofield studied functional, structural and mechanistic understanding of enzymes that employ oxygen and 2-oxoglutarate as a co-substrate. His work has opened up new possibilities in antibiotic research, oxygen sensing, and gene regulation.

Kathleen "Kathy" Matthews is an American biochemist specializing in DNA/protein interactions. She is the Stewart Memorial Professor of BioSciences at Rice University.

Squire Booker

Squire Booker is an American biochemist at Penn State University. Booker directs an interdisciplinary chemistry research program related to fields of biochemistry, enzymology, protein chemistry, natural product biosynthesis, and mechanisms of radical dependent enzymes. He is an associate editor for the American Chemical Society Biochemistry Journal, is a Hughes Medical Institute Investigator, and an Eberly Distinguished Chair in Science at Penn State University.

Paula Jane Booth is an English chemist who holds the Daniell Chair of Chemistry at King's College London and is Head of Department. Booth was awarded a Philip Leverhulme Prize in 2003, a Royal Society Wolfson Research Merit Award in 2008 and an ERC Advanced grant in 2012 for her novel work on investigating the mechanisms of biological self-assembly.

Jin Zhang is a Chinese-American biochemist. She is a professor of pharmacology, chemistry and biochemistry, and biomedical engineering at the University of California, San Diego.

Jue Chen is a Chinese-born American structural biologist and biochemist. She is the William E. Ford professor of biochemistry and head of the Laboratory of Membrane Biology and Biophysics at the Rockefeller University and a Howard Hughes Medical Institute investigator. Her research focuses on elucidating the structure and function of ATP-binding cassette (ABC) transporters.

Claire E. Eyers British biological mass spectrometrist

Claire Eyers is a British biological mass spectrometrist who is professor of biological mass spectrometry at the University of Liverpool, where she heads up the Centre for Proteome Research. Her research publications list her either as Claire E Haydon or Claire E Eyers.

Barbara Imperiali is a Professor of Biology and Chemistry at Massachusetts Institute of Technology and Affiliate Member of the Broad Institute. She is an elected member of the National Academy of Sciences and a Fellow of the Royal Society of Chemistry.

Emma Raven is a British chemist and chemical biologist. She is a Professor of Chemistry and Head of the School of Chemistry at the University of Bristol. She was previously a Professor at the University of Leicester. Her research work is concerned with the role of heme in biology, in particular on the mechanism of action, structures and biological function of heme proteins.

George Stark

George Stark is an American chemist and biochemist. His research interests include protein and enzyme function and modification, interferons and cytokines, signal transduction, and gene expression.

Yu-Shan Lin (chemist) Taiwanese chemist

Yu-Shan Lin is a computational chemist. She is an associate professor of chemistry at Tufts University in the United States. Her research lab uses computational chemistry to understand and design biomolecules, with topics focusing on cyclic peptides, protein folding, and collagen.

References

  1. Bristol, University of. "Professor Dek Woolfson - People in the School of Chemistry". www.bris.ac.uk. Retrieved 2020-06-29.
  2. Bristol, University of. "Professor Dek Woolfson - Biochemistry". www.bristol.ac.uk. Retrieved 2020-06-29.
  3. "Bristol BioDesign Institute".
  4. "Rosa Biotech | Biosensing & diagnostics". Mysite. Retrieved 2020-06-29.
  5. Bristol, University of. "BrisSynBio | BrisSynBio | University of Bristol". www.bristol.ac.uk. Retrieved 2020-06-29.
  6. Bristol, University of. "Bristol BioDesign Institute | Research | University of Bristol". www.bristol.ac.uk. Retrieved 2020-06-29.
  7. "New Max Planck-Bristol Centre for Minimal Biology announced". www.maxsynbio.mpg.de. Retrieved 2020-06-29.
  8. Bristol, University of. "March: minimal-biology | News and features | University of Bristol". www.bristol.ac.uk. Retrieved 2020-06-29.
  9. "Rosa Biotech | Biosensing & diagnostics". Mysite. Retrieved 2020-06-29.
  10. Woolfson, D. N.; Cooper, A.; Harding, M. M.; Williams, D. H.; Evans, P. A. (1993-01-20). "Protein folding in the absence of the solvent ordering contribution to the hydrophobic interaction". Journal of Molecular Biology. 229 (2): 502–511. doi:10.1006/jmbi.1993.1049. ISSN   0022-2836. PMID   8381493.
  11. Hutchinson, E. G.; Sessions, R. B.; Thornton, J. M.; Woolfson, D. N. (November 1998). "Determinants of strand register in antiparallel beta-sheets of proteins". Protein Science. 7 (11): 2287–2300. doi:10.1002/pro.5560071106. ISSN   0961-8368. PMC   2143855 . PMID   9827995.
  12. Bartlett, Gail J.; Choudhary, Amit; Raines, Ronald T.; Woolfson, Derek N. (August 2010). "n → π * interactions in proteins". Nature Chemical Biology. 6 (8): 615–620. doi:10.1038/nchembio.406. ISSN   1552-4469. PMC   2921280 . PMID   20622857.
  13. Baker, Emily G.; Bartlett, Gail J.; Crump, Matthew P.; Sessions, Richard B.; Linden, Noah; Faul, Charl F. J.; Woolfson, Derek N. (March 2015). "Local and macroscopic electrostatic interactions in single α-helices". Nature Chemical Biology. 11 (3): 221–228. doi:10.1038/nchembio.1739. ISSN   1552-4469. PMC   4668598 . PMID   25664692.
  14. Hudson, Kieran L.; Bartlett, Gail J.; Diehl, Roger C.; Agirre, Jon; Gallagher, Timothy; Kiessling, Laura L.; Woolfson, Derek N. (2015-12-09). "Carbohydrate–Aromatic Interactions in Proteins". Journal of the American Chemical Society. 137 (48): 15152–15160. doi:10.1021/jacs.5b08424. ISSN   0002-7863. PMC   4676033 . PMID   26561965.
  15. Woolfson, Derek N. (2005). "The design of coiled-coil structures and assemblies". Advances in Protein Chemistry. 70: 79–112. doi:10.1016/S0065-3233(05)70004-8. ISBN   9780120342709. ISSN   0065-3233. PMID   15837514.
  16. Woolfson, D. N.; Alber, T. (August 1995). "Predicting oligomerization states of coiled coils". Protein Science. 4 (8): 1596–1607. doi:10.1002/pro.5560040818. ISSN   0961-8368. PMC   2143200 . PMID   8520486.
  17. Thomson, Andrew R.; Wood, Christopher W.; Burton, Antony J.; Bartlett, Gail J.; Sessions, Richard B.; Brady, R. Leo; Woolfson, Derek N. (2014-10-24). "Computational design of water-soluble α-helical barrels". Science. 346 (6208): 485–488. Bibcode:2014Sci...346..485T. doi:10.1126/science.1257452. hdl: 1983/2ece3b66-e293-4722-960b-e5765b77bede . ISSN   1095-9203. PMID   25342807. S2CID   206560020.
  18. Woolfson, Derek N.; Bartlett, Gail J.; Burton, Antony J.; Heal, Jack W.; Niitsu, Ai; Thomson, Andrew R.; Wood, Christopher W. (August 2015). "De novo protein design: how do we expand into the universe of possible protein structures?". Current Opinion in Structural Biology. 33: 16–26. doi: 10.1016/j.sbi.2015.05.009 . ISSN   1879-033X. PMID   26093060.
  19. Fletcher, Jordan M.; Harniman, Robert L.; Barnes, Frederick R. H.; Boyle, Aimee L.; Collins, Andrew; Mantell, Judith; Sharp, Thomas H.; Antognozzi, Massimo; Booth, Paula J.; Linden, Noah; Miles, Mervyn J. (2013-05-03). "Self-assembling cages from coiled-coil peptide modules". Science. 340 (6132): 595–599. Bibcode:2013Sci...340..595F. doi:10.1126/science.1233936. ISSN   1095-9203. PMC   6485442 . PMID   23579496.
  20. "Woolfson Group". Woolfson Group. Retrieved 2020-06-29.
  21. Hudson, Kieran L.; Bartlett, Gail J.; Diehl, Roger C.; Agirre, Jon; Gallagher, Timothy; Kiessling, Laura L.; Woolfson, Derek N. (2015-12-09). "Carbohydrate–Aromatic Interactions in Proteins". Journal of the American Chemical Society. 137 (48): 15152–15160. doi:10.1021/jacs.5b08424. ISSN   0002-7863. PMC   4676033 . PMID   26561965.
  22. Woolfson, Derek N. (2005-01-01), "The Design of Coiled-Coil Structures and Assemblies", Advances in Protein Chemistry, Fibrous Proteins: Coiled-Coils, Collagen and Elastomers, Academic Press, 70: 79–112, doi:10.1016/S0065-3233(05)70004-8, ISBN   9780120342709, PMID   15837514 , retrieved 2020-06-29
  23. Woolfson, Derek N.; Alber, Tom (1995). "Predicting oligomerization states of coiled coils". Protein Science. 4 (8): 1596–1607. doi:10.1002/pro.5560040818. ISSN   1469-896X. PMC   2143200 . PMID   8520486.
  24. Walshaw, J.; Woolfson, D. N. (2001-04-13). "Socket: a program for identifying and analysing coiled-coil motifs within protein structures". Journal of Molecular Biology. 307 (5): 1427–1450. doi:10.1006/jmbi.2001.4545. ISSN   0022-2836. PMID   11292353.
  25. Wood, Christopher W.; Woolfson, Derek N. (January 2018). "CCBuilder 2.0: Powerful and accessible coiled‐coil modeling". Protein Science. 27 (1): 103–111. doi:10.1002/pro.3279. ISSN   0961-8368. PMC   5734305 . PMID   28836317.
  26. "Protein and Peptide Science Group Awards". www.rsc.org. Retrieved 2020-06-29.
  27. "RSC Interdisciplinary Prize 2016 Winner". www.rsc.org. Retrieved 2020-06-29.
  28. "Royal Society announces new round of esteemed Wolfson Research Merit Awards | Royal Society". royalsociety.org. Retrieved 2020-06-29.
  29. "Royal Society Wolfson Research Merit Award | Royal Society". royalsociety.org. Retrieved 2020-06-29.
  30. "RSC Interdisciplinary Prize 2016 Winner". www.rsc.org. Retrieved 2020-06-29.
  31. "Humboldt Research Award". www.humboldt-foundation.de. Retrieved 2020-06-29.