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The biological pump (or ocean carbon biological pump or marine biological carbon pump) is the ocean's biologically driven sequestration of carbon from the atmosphere and land runoff to the ocean interior and seafloor sediments. In other words, it is a biologically mediated process which results in the sequestering of carbon in the deep ocean away from the atmosphere and the land. The biological pump is the biological component of the "marine carbon pump" which contains both a physical and biological component. It is the part of the broader oceanic carbon cycle responsible for the cycling of organic matter formed mainly by phytoplankton during photosynthesis (soft-tissue pump), as well as the cycling of calcium carbonate (CaCO3) formed into shells by certain organisms such as plankton and mollusks (carbonate pump).
The mesopelagiczone, also known as the middle pelagic or twilight zone, is the part of the pelagic zone that lies between the photic epipelagic and the aphotic bathypelagic zones. It is defined by light, and begins at the depth where only 1% of incident light reaches and ends where there is no light; the depths of this zone are between approximately 200 to 1,000 meters below the ocean surface.
Iron-oxidizing bacteria are chemotrophic bacteria that derive energy by oxidizing dissolved iron. They are known to grow and proliferate in waters containing iron concentrations as low as 0.1 mg/L. However, at least 0.3 ppm of dissolved oxygen is needed to carry out the oxidation.
Dissolved organic carbon (DOC) is the fraction of organic carbon operationally defined as that which can pass through a filter with a pore size typically between 0.22 and 0.7 micrometers. The fraction remaining on the filter is called particulate organic carbon (POC).
The microbial loop describes a trophic pathway where, in aquatic systems, dissolved organic carbon (DOC) is returned to higher trophic levels via its incorporation into bacterial biomass, and then coupled with the classic food chain formed by phytoplankton-zooplankton-nekton. In soil systems, the microbial loop refers to soil carbon. The term microbial loop was coined by Farooq Azam, Tom Fenchel et al. in 1983 to include the role played by bacteria in the carbon and nutrient cycles of the marine environment.
The sea surface microlayer (SML) is the boundary interface between the atmosphere and ocean, covering about 70% of Earth's surface. With an operationally defined thickness between 1 and 1,000 μm (1.0 mm), the SML has physicochemical and biological properties that are measurably distinct from underlying waters. Recent studies now indicate that the SML covers the ocean to a significant extent, and evidence shows that it is an aggregate-enriched biofilm environment with distinct microbial communities. Because of its unique position at the air-sea interface, the SML is central to a range of global marine biogeochemical and climate-related processes.
Extracellular polymeric substances (EPSs) are natural polymers of high molecular weight secreted by microorganisms into their environment. EPSs establish the functional and structural integrity of biofilms, and are considered the fundamental component that determines the physicochemical properties of a biofilm. EPS in the matrix of biofilms provides compositional support and protection of microbial communities from the harsh environments. Components of EPS can be of different classes of polysaccharides, lipids, nucleic acids, proteins, lipopolysaccharides, and minerals.
Phototrophic biofilms are microbial communities generally comprising both phototrophic microorganisms, which use light as their energy source, and chemoheterotrophs. Thick laminated multilayered phototrophic biofilms are usually referred to as microbial mats or phototrophic mats. These organisms, which can be prokaryotic or eukaryotic organisms like bacteria, cyanobacteria, fungi, and microalgae, make up diverse microbial communities that are affixed in a mucous matrix, or film. These biofilms occur on contact surfaces in a range of terrestrial and aquatic environments. The formation of biofilms is a complex process and is dependent upon the availability of light as well as the relationships between the microorganisms. Biofilms serve a variety of roles in aquatic, terrestrial, and extreme environments; these roles include functions which are both beneficial and detrimental to the environment. In addition to these natural roles, phototrophic biofilms have also been adapted for applications such as crop production and protection, bioremediation, and wastewater treatment.
In the deep ocean, marine snow is a continuous shower of mostly organic detritus falling from the upper layers of the water column. It is a significant means of exporting energy from the light-rich photic zone to the aphotic zone below, which is referred to as the biological pump. Export production is the amount of organic matter produced in the ocean by primary production that is not recycled (remineralised) before it sinks into the aphotic zone. Because of the role of export production in the ocean's biological pump, it is typically measured in units of carbon. The term was coined by explorer William Beebe as observed from his bathysphere. As the origin of marine snow lies in activities within the productive photic zone, the prevalence of marine snow changes with seasonal fluctuations in photosynthetic activity and ocean currents. Marine snow can be an important food source for organisms living in the aphotic zone, particularly for organisms that live very deep in the water column.
Bacterioplankton refers to the bacterial component of the plankton that drifts in the water column. The name comes from the Ancient Greek word πλανκτος, meaning "wanderer" or "drifter", and bacterium, a Latin term coined in the 19th century by Christian Gottfried Ehrenberg. They are found in both seawater and freshwater.
Hypoxia refers to low oxygen conditions. For air-breathing organisms, hypoxia is problematic but for many anaerobic organisms, hypoxia is essential. Hypoxia applies to many situations, but usually refers to the atmosphere and natural waters.
Alteromonas macleodii is a species of widespread marine bacterium found in surface waters across temperate and tropical regions. First discovered in a survey of aerobic bacteria in 1972, A. macleodii has since been placed within the phylum Pseudomonadota and is recognised as a prominent component of surface waters between 0 and 50 metres. Alteromonas macleodii has a single circular DNA chromosome of 4.6 million base pairs. Variable regions in the genome of A. macleodii confer functional diversity to closely related strains and facilitate different lifestyles and strategies. Certain A. macleodii strains are currently being explored for their industrial uses, including in cosmetics, bioethanol production and rare earth mining.
The oceanic carbon cycle is composed of processes that exchange carbon between various pools within the ocean as well as between the atmosphere, Earth interior, and the seafloor. The carbon cycle is a result of many interacting forces across multiple time and space scales that circulates carbon around the planet, ensuring that carbon is available globally. The Oceanic carbon cycle is a central process to the global carbon cycle and contains both inorganic carbon and organic carbon. Part of the marine carbon cycle transforms carbon between non-living and living matter.
Mycoplankton are saprotrophic members of the plankton communities of marine and freshwater ecosystems. They are composed of filamentous free-living fungi and yeasts that are associated with planktonic particles or phytoplankton. Similar to bacterioplankton, these aquatic fungi play a significant role in heterotrophicmineralization and nutrient cycling. Mycoplankton can be up to 20 mm in diameter and over 50 mm in length.
Alice Alldredge is an American oceanographer and marine biologist who studies marine snow, carbon cycling, microbes and plankton in the ecology of the ocean. She has been one of the most cited scientific researchers since 2003.
Particulate organic matter (POM) is a fraction of total organic matter operationally defined as that which does not pass through a filter pore size that typically ranges in size from 0.053 millimeters (53 μm) to 2 millimeters.
The viral shunt is a mechanism that prevents marine microbial particulate organic matter (POM) from migrating up trophic levels by recycling them into dissolved organic matter (DOM), which can be readily taken up by microorganisms. The DOM recycled by the viral shunt pathway is comparable to the amount generated by the other main sources of marine DOM.
Total inorganic carbon is the sum of the inorganic carbon species.
Transparent exopolymer particles (TEPs) are extracellular acidic polysaccharides produced by phytoplankton and bacteria in saltwater, freshwater, and wastewater. They are incredibly abundant and play a significant role in biogeochemical cycling of carbon and other elements in water. Through this, they also play a role in the structure of food webs and trophic levels. TEP production and overall concentration has been observed to be higher in the Pacific Ocean compared to the Atlantic, and is more related to solar radiation in the Pacific. TEP concentration has been found to decrease with depth, having the highest concentration at the surface, especially associated with the SML, either by upward flux or sea surface production. Chlorophyll a has been found to be the best indicator of TEP concentration, rather than heterotrophic grazing abundance, further emphasizing the role of phytoplankton in TEP production. TEP concentration is especially enhanced by haptophyte phytoplanktonic dominance, solar radiation exposure, and close proximity to sea ice. TEPs also do not seem to show any diel cycles. High concentrations of TEPs in the surface ocean slow the sinking of solid particle aggregations, prolonging pelagic residence time. TEPs may provide an upward flux of materials such as bacteria, phytoplankton, carbon, and trace nutrients. High TEP concentrations were found under arctic sea ice, probably released by sympagic algae. TEP is efficiently recycled in the ocean, as heterotrophic grazers such as zooplankton and protists consume TEP and produce new TEP precursors to be reused, further emphasizing the importance of TEPs in marine carbon cycling. TEP abundance tends to be higher in coastal, shallow waters compared to deeper, oceanic waters. Diatom-dominated phytoplankton colonies produce larger, and stickier, TEPs, which may indicate that TEP size distribution and composition may be a useful tool in determining aggregate planktonic community structure.
Lepidodinium is a genus of dinoflagellates belonging to the family Gymnodiniaceae. Lepidodinium is a genus of green dinoflagellates in the family Gymnodiniales. It contains two different species, Lepidodiniumchlorophorum and Lepidodinium viride. They are characterised by their green colour caused by a plastid derived from Pedinophyceae, a green algae group. This plastid has retained chlorophyll a and b, which is significant because it differs from the chlorophyll a and c usually observed in dinoflagellate peridinin plastids. They are the only known dinoflagellate genus to possess plastids derived from green algae. Lepidodinium chlorophorum is known to cause sea blooms, partially off the coast of France, which has dramatic ecological and economic consequences. Lepidodinium produces some of the highest volumes of Transparent Exopolymer Particles of any phytoplankton, which can contribute to bivalve death and the creation of anoxic conditions in blooms, as well as playing an important role in carbon cycling in the ocean.
References
- ↑ Cho, J. C.; Vergin, K. L.; Morris, R. M.; Giovannoni, S. J. (2004). "Lentisphaera araneosa gen. Nov., sp. Nov, a transparent exopolymer producing marine bacterium, and the description of a novel bacterial phylum, Lentisphaerae". Environmental Microbiology. 6 (6): 611–621. doi:10.1111/j.1462-2920.2004.00614.x. PMID 15142250.
- ↑ Bar-Zeev, Edo; Passow, Uta; Romero-Vargas Castrillón, Santiago; Elimelech, Menachem (2015-01-20). "Transparent Exopolymer Particles: From Aquatic Environments and Engineered Systems to Membrane Biofouling". Environmental Science & Technology. 49 (2): 691–707. Bibcode:2015EnST...49..691B. doi:10.1021/es5041738. ISSN 0013-936X. PMID 25494664.
- ↑ Passow, U. (2002-11-01). "Transparent exopolymer particles (TEP) in aquatic environments" (PDF). Progress in Oceanography. 55 (3–4): 287–333. Bibcode:2002PrOce..55..287P. doi:10.1016/S0079-6611(02)00138-6. ISSN 0079-6611. S2CID 31747785.
- ↑ Miller, Lisa; Vagle, Svein; Wurl, Oliver (July 2011). "Production and fate of transparent exopolymer particles in the ocean". Journal of Geophysical Research: Oceans. 116 (C7): C00H13. Bibcode:2011JGRC..116.0H13W. doi: 10.1029/2011JC007342 . ISSN 0148-0227.
- ↑ Gazeau, Frederic; Guieu, Cecile; Louis, Justine; Pedrotti, Maria (17 February 2017). "Experimental evidence of formation of transparent exopolymer particles (TEP) and POC export provoked by dust addition under current and high pCO2 conditions" (PDF). PLOS ONE. 12 (2): e0171980. Bibcode:2017PLoSO..1271980L. doi: 10.1371/journal.pone.0171980 . PMC 5315277 . PMID 28212418.
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