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The hypocotyl (short for "hypocotyledonous stem", [1] meaning "below seed leaf") is the stem of a germinating seedling, found below the cotyledons (seed leaves) and above the radicle (root).
As the plant embryo grows at germination, it sends out a shoot called a radicle that becomes the primary root, and then penetrates down into the soil. After emergence of the radicle, the hypocotyl emerges and lifts the growing tip (usually including the seed coat) above the ground, bearing the embryonic leaves (called cotyledons), and the plumule that gives rise to the first true leaves. The hypocotyl is the primary organ of extension of the young plant and develops into the stem.
The early development of a monocot seedling like cereals and other grasses is somewhat different. A structure called the coleoptile, essentially a part of the cotyledon, protects the young stem and plumule as growth pushes them up through the soil. A mesocotyl—that part of the young plant that lies between the seed (which remains buried) and the plumule—extends the shoot up to the soil surface, where secondary roots develop from just beneath the plumule. The primary root from the radicle may then fail to develop further. The mesocotyl is considered to be partly hypocotyl and partly cotyledon (see seed ).
Not all monocots develop like the grasses. The onion develops in a manner similar to the first sequence described above, the seed coat and endosperm (stored food reserve) pulled upwards as the cotyledon extends. Later, the first true leaf grows from the node between the radicle and the sheath-like cotyledon, breaking through the cotyledon to grow past it.
In some plants, the hypocotyl becomes enlarged as a storage organ. Examples include cyclamen, gloxinia and celeriac. In cyclamen this storage organ is called a tuber.
One of the widely used assays in the field of photobiology is the investigation of the effect of changes in light quantity and quality on hypocotyl elongation. It is frequently used to study the growth promoting vs. growth repressing effects of application of plant hormones like ethylene. Under normal light conditions, hypocotyl growth is controlled by a process called photomorphogenesis, while shading the seedlings evokes a rapid transcriptional response which negatively regulates photomorphogenesis and results in increased rates of hypocotyl growth. [2] This rate is highest when plants are kept in darkness mediated by a process called skotomorphogenesis, which contrasts photomorphogenesis.
A seed is an embryonic plant enclosed in a protective outer covering. The formation of the seed is part of the process of reproduction in seed plants, the spermatophytes, including the gymnosperm and angiosperm plants.
A cotyledon is a significant part of the embryo within the seed of a plant, and is defined as "the embryonic leaf in seed-bearing plants, one or more of which are the first to appear from a germinating seed." The number of cotyledons present is one characteristic used by botanists to classify the flowering plants (angiosperms). Species with one cotyledon are called monocotyledonous ("monocots"). Plants with two embryonic leaves are termed dicotyledonous ("dicots").
In vascular plants, the roots are the organs of a plant that are modified to provide anchorage for the plant and take in water and nutrients into the plant body, which allows plants to grow taller and faster. They are most often below the surface of the soil, but roots can also be aerial or aerating, that is, growing up above the ground or especially above water.
In botany, the radicle is the first part of a seedling to emerge from the seed during the process of germination. The radicle is the embryonic root of the plant, and grows downward in the soil. Above the radicle is the embryonic stem or hypocotyl, supporting the cotyledon(s).
Germination is the process by which an organism grows from a seed or spore. The term is applied to the sprouting of a seedling from a seed of an angiosperm or gymnosperm, the growth of a sporeling from a spore, such as the spores of fungi, ferns, bacteria, and the growth of the pollen tube from the pollen grain of a seed plant.
Plant hormones are signal molecules, produced within plants, that occur in extremely low concentrations. Plant hormones control all aspects of plant growth and development, from embryogenesis, the regulation of organ size, pathogen defense, stress tolerance and through to reproductive development. Unlike in animals each plant cell is capable of producing hormones. Went and Thimann coined the term "phytohormone" and used it in the title of their 1937 book.
Auxins are a class of plant hormones with some morphogen-like characteristics. Auxins play a cardinal role in coordination of many growth and behavioral processes in plant life cycles and are essential for plant body development. The Dutch biologist Frits Warmolt Went first described auxins and their role in plant growth in the 1920s. Kenneth V. Thimann became the first to isolate one of these phytohormones and to determine its chemical structure as indole-3-acetic acid (IAA). Went and Thimann co-authored a book on plant hormones, Phytohormones, in 1937.
Plant embryogenesis is a process that occurs after the fertilization of an ovule to produce a fully developed plant embryo. This is a pertinent stage in the plant life cycle that is followed by dormancy and germination. The zygote produced after fertilization must undergo various cellular divisions and differentiations to become a mature embryo. An end stage embryo has five major components including the shoot apical meristem, hypocotyl, root meristem, root cap, and cotyledons. Unlike animal embryogenesis, plant embryogenesis results in an immature form of the plant, lacking most structures like leaves, stems, and reproductive structures. However, both plants and animals pass through a phylotypic stage that evolved independently and that causes a developmental constraint limiting morphological diversification.
In developmental biology, photomorphogenesis is light-mediated development, where plant growth patterns respond to the light spectrum. This is a completely separate process from photosynthesis where light is used as a source of energy. Phytochromes, cryptochromes, and phototropins are photochromic sensory receptors that restrict the photomorphogenic effect of light to the UV-A, UV-B, blue, and red portions of the electromagnetic spectrum.
Shade avoidance is a set of responses that plants display when they are subjected to the shade of another plant. It often includes elongation, altered flowering time, increased apical dominance and altered partitioning of resources. This set of responses is collectively called the shade-avoidance syndrome (SAS).
A seedling is a young sporophyte developing out of a plant embryo from a seed. Seedling development starts with germination of the seed. A typical young seedling consists of three main parts: the radicle, the hypocotyl, and the cotyledons. The two classes of flowering plants (angiosperms) are distinguished by their numbers of seed leaves: monocotyledons (monocots) have one blade-shaped cotyledon, whereas dicotyledons (dicots) possess two round cotyledons. Gymnosperms are more varied. For example, pine seedlings have up to eight cotyledons. The seedlings of some flowering plants have no cotyledons at all. These are said to be acotyledons.
An epicotyl is important for the beginning stages of a plant's life. It is the region of a seedling stem above the stalks of the seed leaves of an embryo plant. It grows rapidly, showing hypogeal germination, and extends the stem above the soil surface. A common misconception is that the epicotyl, being closer to the apex of the plant, is the first part to emerge after germination - rather, the hypocotyl, the region of the stem between the point of attachment of the cotyledons and the root - forms a hook during hypogeal germination and pushes out of the soil, allowing the more delicate tissues of the plumules and apical meristem to avoid damage from pushing through the soil. The epicotyl will expand and form the point of attachment of the shoot apex and leaf primordia or "first true leaves". Cotyledons may remain belowground or be pushed up aboveground with the growing stem depending on the plant species in question.
Etiolation is a process in flowering plants grown in partial or complete absence of light. It is characterized by long, weak stems; smaller leaves due to longer internodes; and a pale yellow color (chlorosis). The development of seedlings in the dark is known as "skotomorphogenesis" and leads to etiolated seedlings.
Underground stems are modified plants that derive from stem tissue but exist under the soil surface. They function as storage tissues for food and nutrients, propagation of new clones, and perennation. Types include bulbs, corms, rhizomes, stolons, spindle-shaped, and tubers.
Schippia concolor, the mountain pimento or silver pimeto, is a medium-sized palm species that is native to Belize and Guatemala. Named for its discoverer, Australian botanist William A. Schipp, the species is threatened by habitat loss. It is the sole species in the genus Schippia.
This page provides a glossary of plant morphology. Botanists and other biologists who study plant morphology use a number of different terms to classify and identify plant organs and parts that can be observed using no more than a handheld magnifying lens. This page provides help in understanding the numerous other pages describing plants by their various taxa. The accompanying page—Plant morphology—provides an overview of the science of the external form of plants. There is also an alphabetical list: Glossary of botanical terms. In contrast, this page deals with botanical terms in a systematic manner, with some illustrations, and organized by plant anatomy and function in plant physiology.
Ornamental bulbous plants, often called ornamental bulbs or just bulbs in gardening and horticulture, are herbaceous perennials grown for ornamental purposes, which have underground or near ground storage organs. Botanists distinguish between true bulbs, corms, rhizomes, tubers and tuberous roots, any of which may be termed "bulbs" in horticulture. Bulb species usually lose their upper parts during adverse conditions such as summer drought and heat or winter cold. The bulb's storage organs contain moisture and nutrients that are used to survive these adverse conditions in a dormant state. When conditions become favourable the reserves sustain a new growth cycle. In addition, bulbs permit vegetative or asexual multiplication in these species. Ornamental bulbs are used in parks and gardens and as cut flowers.
Cyclamen persicum, the Persian cyclamen, is a species of flowering herbaceous perennial plant growing from a tuber, native to rocky hillsides, shrubland, and woodland up to 1,200 m (3,900 ft) above sea level, from south-central Turkey to Lebanon-Syria and the Palestine region. It also grows in Algeria and Tunisia and on the Greek islands of Rhodes, Karpathos, and Crete, where it may have been introduced by monks. Cultivars of this species are the commonly seen florist's cyclamen.
Hypogeal germination is a botanical term indicating that the germination of a plant takes place below the ground. An example of a plant with hypogeal germination is the pea. The opposite of hypogeal is epigeal.
The coleorhiza, coleorrhiza or root sheath is a layer of tissue that surrounds the root in the seed and at monocotyledons prevents. It is a protective layer around the rootcap and the root. The coleorhiza is the first part to grow out of the seed. During germination, the coleorhiza initially grows through cell elongation, but is eventually pierced through the root and then remains like a collar around the root base. Also the adventitious roots have a coleorhiza.