Korbinian Strimmer | |
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Born | 1972 |
Alma mater |
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Scientific career | |
Fields | |
Institutions | |
Thesis | Maximum Likelihood Methods in Molecular Phylogenetics (1997) |
Doctoral advisor | Arndt von Haeseler |
Website | strimmerlab |
Korbinian Strimmer (born 1972) is a German statistician specialising in biomedical data science. He is a professor in statistics at the University of Manchester. [2]
Strimmer earned his PhD from the Ludwig Maximilian University of Munich in 1997 under the supervision of Arndt von Haeseler. His thesis is entitled Maximum Likelihood Methods in Molecular Phylogenetics. [1] [3]
Strimmer was a senior lecturer (W2 professor) at the University of Leipzig from 2007 until 2014. [4] From 2014 until 2017, he was a reader at the Imperial College London, before becoming a professor in statistics at the University of Manchester in 2017. [5]
He has co-authored biostatistical and bioinformatics software, [6] including the phylogenetics package TREE-PUZZLE. [7]
From 2014 to 2017 Thomson Reuters and Clarivate Analytics ranked Strimmer four times consecutively among "The World's Most Influential Scientific Minds" in the computer science category according to the number of citations. [4] [8] [9] [10]
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Fiona Brinkman is a Professor in Bioinformatics and Genomics in the Department of Molecular Biology and Biochemistry at Simon Fraser University in British Columbia, Canada, and is a leader in the area of microbial bioinformatics. She is interested in developing "more sustainable, holistic approaches for infectious disease control and conservation of microbiomes".
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TREE-PUZZLE is a computer program used to construct phylogenetic trees from sequence data by maximum likelihood analysis. Branch lengths can be calculated with and without the molecular clock hypothesis.
Treefinder is a computer program for the likelihood-based reconstruction of phylogenetic trees from molecular sequences. It was written by Gangolf Jobb, a former researcher at the University of Munich, Germany, and was originally released in 2004. Treefinder is free of charge, though the most recent license prohibits its use in the USA and eight European countries.
Molecular Evolutionary Genetics Analysis (MEGA) is computer software for conducting statistical analysis of molecular evolution and for constructing phylogenetic trees. It includes many sophisticated methods and tools for phylogenomics and phylomedicine. It is licensed as proprietary freeware. The project for developing this software was initiated by the leadership of Masatoshi Nei in his laboratory at the Pennsylvania State University in collaboration with his graduate student Sudhir Kumar and postdoctoral fellow Koichiro Tamura. Nei wrote a monograph (pp. 130) outlining the scope of the software and presenting new statistical methods that were included in MEGA. The entire set of computer programs was written by Kumar and Tamura. The personal computers then lacked the ability to send the monograph and software electronically, so they were delivered by postal mail. From the start, MEGA was intended to be easy-to-use and include solid statistical methods only.
A supertree is a single phylogenetic tree assembled from a combination of smaller phylogenetic trees, which may have been assembled using different datasets or a different selection of taxa. Supertree algorithms can highlight areas where additional data would most usefully resolve any ambiguities. The input trees of a supertree should behave as samples from the larger tree.
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