PADI2

PADI2
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 4N20, 4N22, 4N24, 4N25, 4N26, 4N28, 4N2A, 4N2B, 4N2C, 4N2D, 4N2E, 4N2F, 4N2G, 4N2H, 4N2I, 4N2K, 4N2L, 4N2M, 4N2N
Identifiers
Aliases	PADI2 , PAD-H19, PAD2, PDI2, peptidyl arginine deiminase 2
External IDs	OMIM: 607935; MGI: 1338892; HomoloGene: 7214; GeneCards: PADI2; OMA:PADI2 - orthologs
Gene location (Human) Chr. Chromosome 1 (human) [1] Band 1p36.13 Start 17,066,761 bp [1] End 17,119,451 bp [1]
Gene location (Mouse) Chr. Chromosome 4 (mouse) [2] Band 4 D3|4 73.01 cM Start 140,633,655 bp [2] End 140,679,897 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in internal globus pallidus C1 segment glutes inferior olivary nucleus inferior ganglion of vagus nerve middle frontal gyrus external globus pallidus subthalamic nucleus gastrocnemius muscle tibialis anterior muscle Top expressed in vestibular membrane of cochlear duct decidua gastrula saccule lacrimal gland digastric muscle retinal pigment epithelium sternocleidomastoid muscle stria vascularis vestibular sensory epithelium More reference expression data BioGPS More reference expression data
Gene ontology Molecular function calcium ion binding estrogen receptor binding hydrolase activity protein-arginine deiminase activity protein homodimerization activity metal ion binding Cellular component extracellular exosome cytoplasm cytosol extracellular region nucleus azurophil granule lumen Biological process negative regulation of chemokine-mediated signaling pathway substantia nigra development intracellular estrogen receptor signaling pathway negative regulation of lymphocyte chemotaxis chromatin organization neutrophil degranulation cellular response to leukemia inhibitory factor Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 11240 18600 Ensembl ENSG00000117115 ENSMUSG00000028927 UniProt Q9Y2J8 Q08642 RefSeq (mRNA) NM_007365 NM_008812 RefSeq (protein) NP_031391 NP_032838 Location (UCSC) Chr 1: 17.07 – 17.12 Mb Chr 4: 140.63 – 140.68 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Protein-arginine deiminase type-2 is an enzyme that in humans is encoded by the PADI2 gene. ^{[5] [6]}

This gene encodes a member of the peptidyl arginine deiminase family of enzymes, which catalyze the post-translational deimination of proteins by converting arginine residues into citrullines in the presence of calcium ions. The family members have distinct substrate specificities and tissue-specific expression patterns. The type II enzyme is the most widely expressed family member. Known substrates for this enzyme include myelin basic protein in the central nervous system and vimentin in skeletal muscle and macrophages.

This enzyme is thought to play a role in the onset and progression of neurodegenerative human disorders, including Alzheimer disease and multiple sclerosis, and it has also been implicated in glaucoma pathogenesis. This gene exists in a cluster with four other paralogous genes. ^[6]

References

1. GRCh38: Ensembl release 89: ENSG00000117115 – Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000028927 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Watanabe K, Senshu T (Oct 1989). "Isolation and characterization of cDNA clones encoding rat skeletal muscle peptidylarginine deiminase". J Biol Chem. 264 (26): 15255–60. doi: 10.1016/S0021-9258(19)84818-4 . PMID   2768262.
6. "Entrez Gene: PADI2 peptidyl arginine deiminase, type II".

Further reading

• Vossenaar ER, Zendman AJ, van Venrooij WJ, Pruijn GJ (2004). "PAD, a growing family of citrullinating enzymes: genes, features and involvement in disease". BioEssays. 25 (11): 1106–18. doi:10.1002/bies.10357. PMID   14579251. S2CID   22194514.
• Chavanas S, Méchin MC, Nachat R, et al. (2006). "Peptidylarginine deiminases and deimination in biology and pathology: relevance to skin homeostasis". J. Dermatol. Sci. 44 (2): 63–72. doi:10.1016/j.jdermsci.2006.07.004. PMID   16973334.
• Moscarello MA, Mastronardi FG, Wood DD (2007). "The role of citrullinated proteins suggests a novel mechanism in the pathogenesis of multiple sclerosis". Neurochem. Res. 32 (2): 251–6. doi:10.1007/s11064-006-9144-5. PMC   1794624 . PMID   17031564.
• Nagase T, Ishikawa K, Suyama M, et al. (1999). "Prediction of the coding sequences of unidentified human genes. XIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro". DNA Res. 6 (1): 63–70. doi: 10.1093/dnares/6.1.63 . PMID   10231032.
• Venter JC, Adams MD, Myers EW, et al. (2001). "The sequence of the human genome". Science. 291 (5507): 1304–51. Bibcode:2001Sci...291.1304V. doi: 10.1126/science.1058040 . PMID   11181995.
• Ishigami A, Ohsawa T, Asaga H, et al. (2002). "Human peptidylarginine deiminase type II: molecular cloning, gene organization, and expression in human skin". Arch. Biochem. Biophys. 407 (1): 25–31. doi:10.1016/S0003-9861(02)00516-7. PMID   12392711.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC   139241 . PMID   12477932.
• Chavanas S, Méchin MC, Takahara H, et al. (2004). "Comparative analysis of the mouse and human peptidylarginine deiminase gene clusters reveals highly conserved non-coding segments and a new human gene, PADI6". Gene. 330: 19–27. doi:10.1016/j.gene.2003.12.038. PMID   15087120.
• Sambandam T, Belousova M, Accaviti-Loper MA, et al. (2005). "Increased peptidylarginine deiminase type II in hypoxic astrocytes". Biochem. Biophys. Res. Commun. 325 (4): 1324–9. doi:10.1016/j.bbrc.2004.10.173. PMID   15555572.
• Nakayama-Hamada M, Suzuki A, Kubota K, et al. (2005). "Comparison of enzymatic properties between hPADI2 and hPADI4". Biochem. Biophys. Res. Commun. 327 (1): 192–200. doi:10.1016/j.bbrc.2004.11.152. PMID   15629448.
• Ishigami A, Ohsawa T, Hiratsuka M, et al. (2005). "Abnormal accumulation of citrullinated proteins catalyzed by peptidylarginine deiminase in hippocampal extracts from patients with Alzheimer's disease". J. Neurosci. Res. 80 (1): 120–8. doi:10.1002/jnr.20431. PMID   15704193. S2CID   45747014.
• Gregory SG, Barlow KF, McLay KE, et al. (2006). "The DNA sequence and biological annotation of human chromosome 1". Nature. 441 (7091): 315–21. Bibcode:2006Natur.441..315G. doi: 10.1038/nature04727 . PMID   16710414.
• Bhattacharya SK, Crabb JS, Bonilha VL, et al. (2006). "Proteomics implicates peptidyl arginine deiminase 2 and optic nerve citrullination in glaucoma pathogenesis". Invest. Ophthalmol. Vis. Sci. 47 (6): 2508–14. doi: 10.1167/iovs.05-1499 . PMID   16723463.
• Mastronardi FG, Noor A, Wood DD, et al. (2007). "Peptidyl argininedeiminase 2 CpG island in multiple sclerosis white matter is hypomethylated". J. Neurosci. Res. 85 (9): 2006–16. doi:10.1002/jnr.21329. PMID   17469138. S2CID   27139497.