Philip A. Beachy

Last updated
Philip Beachy
ProfPhilipABeachy at Stanford Oct 29 2023.jpg
Beachy at Stanford
Born
Philip Arden Beachy

(1958-10-25) October 25, 1958 (age 66)
CitizenshipAmerican
Alma mater
Known for Hedgehog signaling pathway [1]
Awards NAS Award in Molecular Biology (1998)
March of Dimes Prize in Developmental Biology (2008)
Keio Medical Science Prize (2011)
Scientific career
Fields Biochemistry, Developmental & Stem Cell Biology
Institutions
Thesis The UBX Domain in the Bithorax Complex of Drosophila  (1986)
Doctoral advisor David Hogness [2]
Notable students Michelle Monje
Website

Philip Arden Beachy (born October 25, 1958) [3] is Ernest and Amelia Gallo Professor at Stanford University School of Medicine. [2] [4] Beachy isolated the Hedgehog gene in flies, discovered how it is processed and released from cells, and identified its signaling mechanism in target cells. [5] [6] [7] [8] [9] [6]

Contents

He also studied the roles of Hedgehog signaling in development, regeneration and cancer, [10] [11] [12] discovered small molecules that could block the Hedgehog pathway, and advanced them toward patient treatments. [13]

Awards and honors

Beachy has received numerous awards and prizes for his work, including the

Beachy was elected a member of the United States National Academy of Sciences in 2002, and a Fellow of the American Academy of Arts and Sciences (2003). [15]

Research

Philip Beachy made several contributions to the understanding of the Hedgehog signaling pathway; he discovered the Hedgehog signaling protein, how it is processed and released from cells, and identified its mechanism of signaling in target cells. [6] [7] [8] [9] [6] [5] Additionally, Beachy revealed critical roles of Hedgehog signaling in embryonic development, [16] uncovering the basis of human birth defects, including holoprosencephaly, the most common human birth defect in early gestation, affecting ~1 in 200 fetuses. He established the concept that morphogens, such as the Hedgehog protein, form extracellular signaling gradients to pattern embryonic tissues, [10] and demonstrated the continued importance of Hedgehog signaling in the maintenance and regeneration of adult organs. [11] [12] Beachy also pioneered small molecule Hedgehog pathway inhibitors, leading to FDA approval of three such inhibitors (vismodegib, sonidegib, and glasdegib) for the treatment of basal cell carcinoma and chronic myelogenous leukemia.

Hedgehog signaling was unknown when Beachy began his work in the early 1990s. Nüsslein-Volhard's and Wieschaus's seminal 1980 study showed that hedgehog mutations cause unusual bristle patterns in Drosophila embryos. Beachy isolated the Drosophila hedgehog gene and revealed that it encodes a secreted signaling protein, thus launching the field of Hedgehog signaling. [5]

Beachy also identified Hedgehog genes critical for the embryonic development of vertebrates, including mammals. He found, surprisingly, that during its production and release the Hedgehog protein autocatalytically cleaves itself and acquires two lipid modifications, cholesterol and palmitate. [8] [17] These lipids render the Hedgehog signal hydrophobic and shape its cellular distribution throughout tissues. These discoveries established covalent lipid modification as a novel mechanism for regulating signaling protein activity; such lipid modification was later extended to Wnt signaling proteins which, like Hedgehog, play important roles in development, regeneration, and cancer.

Beachy also discovered how Hedgehog is released from the cell. The Dispatched protein, powered by Na+ flux through its transmembrane ion channel, extracts the lipid-modified Hedgehog protein from the membrane and releases it as a complex with its carrier Scube, enabling its long-range action as a developmental signal. [18]

Career

After receiving his Ph.D, he worked as an independent fellow (Staff Associate) at the Carnegie Institution's Department of Embryology in Baltimore for two years. He then accepted a faculty position at the Johns Hopkins University School of Medicine and in the Howard Hughes Medical Institute. In 2006, Beachy moved from Johns Hopkins to  Stanford University School of Medicine, where he has been affiliated with the Institute for Stem Cell Biology and Regenerative Medicine and has held appointments in the Departments of Developmental Biology, Biochemistry, and Urology.

Early life

Beachy was born in Red Lake, Ontario, Canada, on October 25, 1958. [19] Beachy spent eight of his early years of life in the hills of central Puerto Rico. His father was a pastor of a rural church. He attended a school taught in Spanish during the day and then learned to read and write English once he came home from school. At nine, Beachy and his family returned to their home base of Goshen, Indiana where he began attending public school. At the early age of 16, Beachy headed off to Goshen College which was very close to home. At this time, Beachy still did not know of his love for science. “Unlike many people who knew they were going to be scientists from a very early age, I didn't decide that I would try to become a scientist until fairly late on in college,” he says. [2]

Education

Beachy received his bachelor's degree in natural sciences at Goshen College. Beachy first envisioned himself as a doctor, but eventually decided to pursue biological research. He became interested in this field after reading a serialized form of Horace Freeland Judson's book, The Eighth Day of Creation in The New Yorker. "Reading those articles got me excited about molecular biology," says Beachy. After graduating, he continued to do more research and took chemistry courses at the nearby South Bend campus of Indiana University. He then decided to attend graduate school at Stanford University and studied the molecular genetics of fruit fly development with David Hogness. [2] [4] Beachy earned his Ph.D in biochemistry in 1986 at Stanford for research into the Ultrabithorax homeotic gene and its products.

Personal life

Beachy is married to Katrin Andreasson [20] and is the brother of historian Robert M. Beachy, and a cousin of biologist Roger N. Beachy and author Stephen Beachy.[ citation needed ]

Related Research Articles

<span class="mw-page-title-main">Sonic hedgehog protein</span> Signaling molecule in animals

Sonic hedgehog protein (SHH) is encoded for by the SHH gene. The protein is named after the video game character Sonic the Hedgehog.

<span class="mw-page-title-main">Paracrine signaling</span> Form of localized cell signaling

In cellular biology, paracrine signaling is a form of cell signaling, a type of cellular communication in which a cell produces a signal to induce changes in nearby cells, altering the behaviour of those cells. Signaling molecules known as paracrine factors diffuse over a relatively short distance, as opposed to cell signaling by endocrine factors, hormones which travel considerably longer distances via the circulatory system; juxtacrine interactions; and autocrine signaling. Cells that produce paracrine factors secrete them into the immediate extracellular environment. Factors then travel to nearby cells in which the gradient of factor received determines the outcome. However, the exact distance that paracrine factors can travel is not certain.

<span class="mw-page-title-main">Lipid raft</span> Combination in the membranes of cells

The plasma membranes of cells contain combinations of glycosphingolipids, cholesterol and protein receptors organized in glycolipoprotein lipid microdomains termed lipid rafts. Their existence in cellular membranes remains controversial. Indeed, Kervin and Overduin imply that lipid rafts are misconstrued protein islands, which they propose form through a proteolipid code. Nonetheless, it has been proposed that they are specialized membrane microdomains which compartmentalize cellular processes by serving as organising centers for the assembly of signaling molecules, allowing a closer interaction of protein receptors and their effectors to promote kinetically favorable interactions necessary for the signal transduction. Lipid rafts influence membrane fluidity and membrane protein trafficking, thereby regulating neurotransmission and receptor trafficking. Lipid rafts are more ordered and tightly packed than the surrounding bilayer, but float freely within the membrane bilayer. Although more common in the cell membrane, lipid rafts have also been reported in other parts of the cell, such as the Golgi apparatus and lysosomes.

<span class="mw-page-title-main">GLI3</span> Protein-coding gene in the species Homo sapiens

Zinc finger protein GLI3 is a protein that in humans is encoded by the GLI3 gene.

<span class="mw-page-title-main">Phosphatidylinositol 4,5-bisphosphate</span> Chemical compound

Phosphatidylinositol 4,5-bisphosphate or PtdIns(4,5)P2, also known simply as PIP2 or PI(4,5)P2, is a minor phospholipid component of cell membranes. PtdIns(4,5)P2 is enriched at the plasma membrane where it is a substrate for a number of important signaling proteins. PIP2 also forms lipid clusters that sort proteins.

Mad2 is an essential spindle checkpoint protein. The spindle checkpoint system is a regulatory system that restrains progression through the metaphase-to-anaphase transition. The Mad2 gene was first identified in the yeast S. cerevisiae in a screen for genes which when mutated would confer sensitivity to microtubule poisons. The human orthologues of Mad2 were first cloned in a search for human cDNAs that would rescue the microtubule poison-sensitivity of a yeast strain in which a kinetochore binding protein was missing. The protein was shown to be present at unattached kinetochores and antibody inhibition studies demonstrated it was essential to execute a block in the metaphase-to-anaphase transition in response to the microtubule poison nocodazole. Subsequent cloning of the Xenopus laevis orthologue, facilitated by the sharing of the human sequence, allowed for the characterization of the mitotic checkpoint in egg extracts.

The Hedgehog signaling pathway is a signaling pathway that transmits information to embryonic cells required for proper cell differentiation. Different parts of the embryo have different concentrations of hedgehog signaling proteins. The pathway also has roles in the adult. Diseases associated with the malfunction of this pathway include cancer.

<span class="mw-page-title-main">Smoothened</span> Gene found in humans and other animals

Smoothened is a protein that in humans is encoded by the SMO gene. Smoothened is a Class Frizzled G protein-coupled receptor that is a component of the hedgehog signaling pathway and is conserved from flies to humans. It is the molecular target of the natural teratogen cyclopamine. It also is the target of vismodegib, the first hedgehog pathway inhibitor to be approved by the U.S. Food and Drug Administration (FDA).

<span class="mw-page-title-main">Mothers against decapentaplegic homolog 2</span> Protein found in humans

Mothers against decapentaplegic homolog 2, also known as SMAD family member 2 or SMAD2, is a protein that in humans is encoded by the SMAD2 gene. MAD homolog 2 belongs to the SMAD, a family of proteins similar to the gene products of the Drosophila gene 'mothers against decapentaplegic' (Mad) and the C. elegans gene Sma. SMAD proteins are signal transducers and transcriptional modulators that mediate multiple signaling pathways.

<span class="mw-page-title-main">Palmitoylation</span> Attachment of a palmitoyl group (fatty acid) to a protein

In molecular biology, palmitoylation is the covalent attachment of fatty acids, such as palmitic acid, to cysteine (S-palmitoylation) and less frequently to serine and threonine (O-palmitoylation) residues of proteins, which are typically membrane proteins. The precise function of palmitoylation depends on the particular protein being considered. Palmitoylation enhances the hydrophobicity of proteins and contributes to their membrane association. Palmitoylation also appears to play a significant role in subcellular trafficking of proteins between membrane compartments, as well as in modulating protein–protein interactions.

Decapentaplegic (Dpp) is a key morphogen involved in the development of the fruit fly Drosophila melanogaster and is the first validated secreted morphogen. It is known to be necessary for the correct patterning and development of the early Drosophila embryo and the fifteen imaginal discs, which are tissues that will become limbs and other organs and structures in the adult fly. It has also been suggested that Dpp plays a role in regulating the growth and size of tissues. Flies with mutations in decapentaplegic fail to form these structures correctly, hence the name. Dpp is the Drosophila homolog of the vertebrate bone morphogenetic proteins (BMPs), which are members of the TGF-β superfamily, a class of proteins that are often associated with their own specific signaling pathway. Studies of Dpp in Drosophila have led to greater understanding of the function and importance of their homologs in vertebrates like humans.

<span class="mw-page-title-main">TRADD</span> Protein-coding gene in the species Homo sapiens

Tumor necrosis factor receptor type 1-associated DEATH domain protein is a protein that in humans is encoded by the TRADD gene.

<span class="mw-page-title-main">Tumor necrosis factor receptor 1</span> Membrane receptor protein found in humans

Tumor necrosis factor receptor 1 (TNFR1), also known as tumor necrosis factor receptor superfamily member 1A (TNFRSF1A) and CD120a, is a ubiquitous membrane receptor that binds tumor necrosis factor-alpha (TNFα).

<span class="mw-page-title-main">XPO1</span> Protein-coding gene in the species Homo sapiens

Exportin 1 (XPO1), also known as chromosomal region maintenance 1 (CRM1), is a eukaryotic protein that mediates the nuclear export of various proteins and RNAs.

<span class="mw-page-title-main">FRS2</span> Protein-coding gene in humans

Fibroblast growth factor receptor substrate 2 is a protein that in humans is encoded by the FRS2 gene.

<span class="mw-page-title-main">Indian hedgehog (protein)</span> Protein-coding gene in the species Homo sapiens

Indian hedgehog homolog (Drosophila), also known as IHH, is a protein which in humans is encoded by the IHH gene. This cell signaling protein is in the hedgehog signaling pathway. The several mammalian variants of the Drosophila hedgehog gene have been named after the various species of hedgehog; the Indian hedgehog is honored by this one. The gene is not specific to Indian hedgehogs.

<span class="mw-page-title-main">Perilipin-3</span> Protein-coding gene in the species Homo sapiens

Mannose-6-phosphate receptor binding protein 1 (M6PRBP1) is a protein which in humans is encoded by the M6PRBP1 gene. Its gene product, as well as the gene itself, is commonly known as TIP47.

<span class="mw-page-title-main">Matthew P. Scott</span>

Matthew P. Scott is an American biologist who was the tenth president of the Carnegie Institution for Science. While at Stanford University, Scott studied how embryonic and later development is governed by proteins that control gene activity and cell signaling processes. He co- discovered homeobox genes in Drosophila melanogaster working with Amy J. Weiner at Indiana University.

Phosphatidylinositol 5-phosphate (PtdIns5P) is a phosphoinositide, one of the phosphorylated derivatives of phosphatidylinositol (PtdIns), that are well-established membrane-anchored regulatory molecules. Phosphoinositides participate in signaling events that control cytoskeletal dynamics, intracellular membrane trafficking, cell proliferation and many other cellular functions. Generally, phosphoinositides transduce signals by recruiting specific phosphoinositide-binding proteins to intracellular membranes.

<span class="mw-page-title-main">Clifford Tabin</span> American geneticist

Clifford James Tabin is chairman of the Department of Genetics at Harvard Medical School.

References

  1. Porter, J. A.; Young, K. E.; Beachy, P. A. (1996). "Cholesterol Modification of Hedgehog Signaling Proteins in Animal Development". Science. 274 (5285): 255–9. Bibcode:1996Sci...274..255P. doi:10.1126/science.274.5285.255. PMID   8824192. S2CID   11125394.
  2. 1 2 3 4 Marino, M (2004). "Biography of Philip A. Beachy". Proceedings of the National Academy of Sciences. 101 (52): 17897–9. doi: 10.1073/pnas.0408740102 . PMC   539818 . PMID   15611474.
  3. Marquis Who's Who TM. Marquis Who's Who, 2008.
  4. 1 2 "Philip A. Beachy, PhD". HHMI.org. Retrieved 2014-06-17.
  5. 1 2 3 Lee, J. J.; von Kessler, D. P.; Parks, S.; Beachy, P. A. (1992-10-02). "Secretion and localized transcription suggest a role in positional signaling for products of the segmentation gene hedgehog". Cell. 71 (1): 33–50. doi:10.1016/0092-8674(92)90264-d. ISSN   0092-8674. PMID   1394430.
  6. 1 2 3 4 Lee, J. J.; Ekker, S. C.; von Kessler, D. P.; Porter, J. A.; Sun, B. I.; Beachy, P. A. (1994-12-02). "Autoproteolysis in hedgehog protein biogenesis". Science. 266 (5190): 1528–1537. Bibcode:1994Sci...266.1528L. doi:10.1126/science.7985023. ISSN   0036-8075. PMID   7985023.
  7. 1 2 Chamoun, Z.; Mann, R. K.; Nellen, D.; von Kessler, D. P.; Bellotto, M.; Beachy, P. A.; Basler, K. (2001-09-14). "Skinny hedgehog, an acyltransferase required for palmitoylation and activity of the hedgehog signal". Science. 293 (5537): 2080–2084. Bibcode:2001Sci...293.2080C. doi:10.1126/science.1064437. ISSN   0036-8075. PMID   11486055.
  8. 1 2 3 Porter, J. A.; Young, K. E.; Beachy, P. A. (1996-10-11). "Cholesterol modification of hedgehog signaling proteins in animal development". Science. 274 (5285): 255–259. Bibcode:1996Sci...274..255P. doi:10.1126/science.274.5285.255. ISSN   0036-8075. PMID   8824192.
  9. 1 2 Porter, J. A.; von Kessler, D. P.; Ekker, S. C.; Young, K. E.; Lee, J. J.; Moses, K.; Beachy, P. A. (1995-03-23). "The product of hedgehog autoproteolytic cleavage active in local and long-range signalling". Nature. 374 (6520): 363–366. Bibcode:1995Natur.374..363P. doi:10.1038/374363a0. ISSN   0028-0836. PMID   7885476.
  10. 1 2 López-Martínez, A.; Chang, D. T.; Chiang, C.; Porter, J. A.; Ros, M. A.; Simandl, B. K.; Beachy, P. A.; Fallon, J. F. (1995-07-01). "Limb-patterning activity and restricted posterior localization of the amino-terminal product of Sonic hedgehog cleavage". Current Biology. 5 (7): 791–796. Bibcode:1995CBio....5..791L. doi: 10.1016/s0960-9822(95)00156-4 . ISSN   0960-9822. PMID   7583126.
  11. 1 2 Beachy, Philip A.; Karhadkar, Sunil S.; Berman, David M. (2004-09-23). "Mending and malignancy". Nature. 431 (7007): 402. Bibcode:2004Natur.431..402B. doi:10.1038/431402a. ISSN   1476-4687. PMID   15385990.
  12. 1 2 Beachy, Philip A.; Karhadkar, Sunil S.; Berman, David M. (2004-11-18). "Tissue repair and stem cell renewal in carcinogenesis". Nature. 432 (7015): 324–331. Bibcode:2004Natur.432..324B. doi:10.1038/nature03100. ISSN   1476-4687. PMID   15549094.
  13. "Leading Hedgehog inhibitor submitted for approval as skin cancer drug". Nature Reviews Drug Discovery. 10 (11): 803. 2011-11-01. doi:10.1038/nrd3594. ISSN   1474-1784. PMID   21997751.
  14. Anon (2008). "An Interview With... Cliff Tabin". Nature Reviews Genetics. 9 (6): 420. doi:10.1038/nrg2863. PMID   18504824. S2CID   45619315.
  15. "Book of Members, 1780-2010: Chapter B" (PDF). American Academy of Arts and Sciences. Retrieved May 28, 2011.
  16. Chiang, C.; Litingtung, Y.; Lee, E.; Young, K. E.; Corden, J. L.; Westphal, H.; Beachy, P. A. (1996-10-03). "Cyclopia and defective axial patterning in mice lacking Sonic hedgehog gene function". Nature. 383 (6599): 407–413. Bibcode:1996Natur.383..407C. doi:10.1038/383407a0. ISSN   0028-0836. PMID   8837770.
  17. Porter, J. A.; Ekker, S. C.; Park, W. J.; von Kessler, D. P.; Young, K. E.; Chen, C. H.; Ma, Y.; Woods, A. S.; Cotter, R. J.; Koonin, E. V.; Beachy, P. A. (1996-07-12). "Hedgehog patterning activity: role of a lipophilic modification mediated by the carboxy-terminal autoprocessing domain". Cell. 86 (1): 21–34. doi: 10.1016/s0092-8674(00)80074-4 . ISSN   0092-8674. PMID   8689684.
  18. Wang, Qianqian; Asarnow, Daniel E.; Ding, Ke; Mann, Randall K.; Hatakeyama, Jason; Zhang, Yunxiao; Ma, Yong; Cheng, Yifan; Beachy, Philip A. (November 2021). "Dispatched uses Na+ flux to power release of lipid-modified Hedgehog". Nature. 599 (7884): 320–324. doi:10.1038/s41586-021-03996-0. ISSN   1476-4687. PMC   8785653 . PMID   34707294.
  19. "Philip A. Beachy - Stanford University". Yatedo.com. 1958-10-25. Retrieved 2014-06-17.
  20. "Beachy, Ada B. Miller (1925-2005) - MLA Biograph Wiki". mla.bethelks.edu. Retrieved 2025-01-01.