Prachee Avasthi

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Prachee Avasthi
Prachee Avasthi.jpg
Prachee Avasthi
Alma mater University of Illinois at Urbana–Champaign
University of Utah
Scientific career
Institutions University of California, San Francisco
University of Kansas Medical Center

Prachee Avasthi (born 1979) is a Professor of Anatomy and Cell Biology and Science Communicator at Dartmouth College and a co-founder, chief scientific advisor, and incoming CSO at Arcadia Science in Berkeley, California. [1] She works on upwardly motile Chlamydomonas reinhardtii and is on the Board of Directors of eLife.

Contents

Early life and education

Avasthi studied integrative physiology at the University of Illinois at Urbana–Champaign. During her undergraduate program she worked on insect classification and synaptic plasticity. [2] She became more interested in the brain, and earned her PhD in neuroscience under the supervision of Wolfgang Baehr at the University of Utah. [3] [4] During her doctoral studies she investigated how cilia help our eye's photoreceptors detect light. She was a postdoctoral researcher with Wallace Marshall at the University of California, San Francisco. [5] Here she began work on Chlamydomonas reinhardtii , a model organism for studying cilia. [6] Cilia function requires normal cilia length and motility, and Avasthi identified that the dopamine binding G protein-coupled receptors (GPCRs) were the most regularly involved with flagellar length regulation. [7]

Research and career

Avasthi uses Chlamydomonas reinhardtii , a unicellular green alga, to investigate the assembly of cilia. She was particularly interested in the cellular machinery needed to maintain cilia, and used small molecule chemical inhibitors to identify important features in ciliary transport. Avasthi found that actin, a cytoskeleton protein, was required for intraflagellar transport (IFT) regulation in Chlamydomonas reinhardtii . [8] The actin is recruits IFT to basal bodies during the elongation of flagella; and without actin the flagellar length is lost. [8] She saw the same impacts using a myosin inhibitor, which suggests that actin may use a myosin pathway. [8]

In 2015 Avasthi started her own research group at the University of Kansas Medical Center, which is supported by the National Institutes of Health. [9] [10] She combines chemical biology and biochemistry with genetics to understand the mechanisms that regulate assembly of the cilium. [9] In 2018 she was awarded an NIH R35 Outstanding Investigator Award.

Academic service

Avasthi is enthusiastic about reforming scientific research culture, helping early career researchers set up their own laboratories. She launched New PI Slack, an online space for over a thousand new Principal investigators to share notes and ideas. [11] [12] Avasthi supports preprints and the reform of scientific publishing, and is on the Board of Directors of eLife and ASAPbio. [13] [14] [15] In her laboratory she leads a preprint journal club, where members of her group read and review new material, providing feedback to authors. [16]

Related Research Articles

<span class="mw-page-title-main">Flagellum</span> Cellular appendage functioning as locomotive or sensory organelle

A flagellum is a hairlike appendage that protrudes from certain plant and animal sperm cells, from fungal spores (zoospores), and from a wide range of microorganisms to provide motility. Many protists with flagella are known as flagellates.

<span class="mw-page-title-main">Cytoskeleton</span> Network of filamentous proteins that forms the internal framework of cells

The cytoskeleton is a complex, dynamic network of interlinking protein filaments present in the cytoplasm of all cells, including those of bacteria and archaea. In eukaryotes, it extends from the cell nucleus to the cell membrane and is composed of similar proteins in the various organisms. It is composed of three main components: microfilaments, intermediate filaments, and microtubules, and these are all capable of rapid growth or disassembly depending on the cell's requirements.

<i>Chlamydomonas</i> Genus of algae

Chlamydomonas is a genus of green algae consisting of about 150 species of unicellular flagellates, found in stagnant water and on damp soil, in freshwater, seawater, and even in snow as "snow algae". Chlamydomonas is used as a model organism for molecular biology, especially studies of flagellar motility and chloroplast dynamics, biogenesis, and genetics. One of the many striking features of Chlamydomonas is that it contains ion channels (channelrhodopsins) that are directly activated by light. Some regulatory systems of Chlamydomonas are more complex than their homologs in Gymnosperms, with evolutionarily related regulatory proteins being larger and containing additional domains.

<span class="mw-page-title-main">Myosin</span> Superfamily of motor proteins

Myosins are a superfamily of motor proteins best known for their roles in muscle contraction and in a wide range of other motility processes in eukaryotes. They are ATP-dependent and responsible for actin-based motility.

<i>Chlamydomonas reinhardtii</i> Species of alga

Chlamydomonas reinhardtii is a single-cell green alga about 10 micrometres in diameter that swims with two flagella. It has a cell wall made of hydroxyproline-rich glycoproteins, a large cup-shaped chloroplast, a large pyrenoid, and an eyespot apparatus that senses light.

<span class="mw-page-title-main">Axoneme</span> Protein structure forming the core of cilia and flagellae

In molecular biology, an axoneme, also called an axial filament, is the microtubule-based cytoskeletal structure that forms the core of a cilium or flagellum. Cilia and flagella are found on many cells, organisms, and microorganisms, to provide motility. The axoneme serves as the "skeleton" of these organelles, both giving support to the structure and, in some cases, the ability to bend. Though distinctions of function and length may be made between cilia and flagella, the internal structure of the axoneme is common to both.

<span class="mw-page-title-main">Motor protein</span> Class of molecular proteins

Motor proteins are a class of molecular motors that can move along the cytoskeleton of cells. They convert chemical energy into mechanical work by the hydrolysis of ATP. Flagellar rotation, however, is powered by a proton pump.

<span class="mw-page-title-main">Intraflagellar transport</span> Cellular process

Intraflagellar transport (IFT) is a bidirectional motility along axoneme microtubules that is essential for the formation (ciliogenesis) and maintenance of most eukaryotic cilia and flagella. It is thought to be required to build all cilia that assemble within a membrane projection from the cell surface. Plasmodium falciparum cilia and the sperm flagella of Drosophila are examples of cilia that assemble in the cytoplasm and do not require IFT. The process of IFT involves movement of large protein complexes called IFT particles or trains from the cell body to the ciliary tip and followed by their return to the cell body. The outward or anterograde movement is powered by kinesin-2 while the inward or retrograde movement is powered by cytoplasmic dynein 2/1b. The IFT particles are composed of about 20 proteins organized in two subcomplexes called complex A and B.

<span class="mw-page-title-main">Myofilament</span> The two protein filaments of myofibrils in muscle cells

Myofilaments are the three protein filaments of myofibrils in muscle cells. The main proteins involved are myosin, actin, and titin. Myosin and actin are the contractile proteins and titin is an elastic protein. The myofilaments act together in muscle contraction, and in order of size are a thick one of mostly myosin, a thin one of mostly actin, and a very thin one of mostly titin.

<span class="mw-page-title-main">Protein filament</span> Long chain of protein monomers

In biology, a protein filament is a long chain of protein monomers, such as those found in hair, muscle, or in flagella. Protein filaments form together to make the cytoskeleton of the cell. They are often bundled together to provide support, strength, and rigidity to the cell. When the filaments are packed up together, they are able to form three different cellular parts. The three major classes of protein filaments that make up the cytoskeleton include: actin filaments, microtubules and intermediate filaments.

<span class="mw-page-title-main">MYO10</span> Protein-coding gene in the species Homo sapiens

Myosin X, also known as MYO10, is a protein that in humans is encoded by the MYO10 gene.

<span class="mw-page-title-main">Arp2/3 complex</span> Macromolecular complex

Arp2/3 complex is a seven-subunit protein complex that plays a major role in the regulation of the actin cytoskeleton. It is a major component of the actin cytoskeleton and is found in most actin cytoskeleton-containing eukaryotic cells. Two of its subunits, the Actin-Related Proteins ARP2 and ARP3, closely resemble the structure of monomeric actin and serve as nucleation sites for new actin filaments. The complex binds to the sides of existing ("mother") filaments and initiates growth of a new ("daughter") filament at a distinctive 70-degree angle from the mother. Branched actin networks are created as a result of this nucleation of new filaments. The regulation of rearrangements of the actin cytoskeleton is important for processes like cell locomotion, phagocytosis, and intracellular motility of lipid vesicles.

James A. Spudich is an American scientist and professor. He is the Douglass M. and Nola Leishman Professor of Biochemistry and of Cardiovascular Disease at Stanford University and works on the molecular basis of muscle contraction. He was awarded the Albert Lasker Basic Medical Research Award in 2012 with Michael Sheetz and Ronald Vale. He is a Fellow of the American Academy of Arts and Sciences and a Member of the National Academy of Sciences.

<span class="mw-page-title-main">Ronald Vale</span> American biochemist

Ronald David Vale ForMemRS is an American biochemist and cell biologist. He is a professor at the Department of Cellular and Molecular Pharmacology, University of California, San Francisco. His research is focused on motor proteins, particularly kinesin and dynein. He was awarded the Canada Gairdner International Award for Biomedical Research in 2019, the Shaw Prize in Life Science and Medicine in 2017 together with Ian Gibbons, and the Albert Lasker Award for Basic Medical Research in 2012 alongside Michael Sheetz and James Spudich. He is a fellow of the American Academy of Arts and Sciences and a member of the National Academy of Sciences. He was the president of the American Society for Cell Biology in 2012. He has also been an investigator at the Howard Hughes Medical Institute since 1995. In 2019, Vale was named executive director of the Janelia Research Campus and a vice president of HHMI; his appointment began in early 2020.

<span class="mw-page-title-main">Leslie M. Hicks</span> Chemist, researcher

Leslie Hicks is an American associate professor of analytical chemistry at the University of North Carolina at Chapel Hill. Her work primarily focuses on the study of proteomics and protein post-translational modifications using mass spectrometry, and identifying biologically active peptides in plants.

Jessica Polka is a biochemist and the Executive Director of ASAPbio, a non-profit initiative promoting innovation and transparency via preprints and open peer review. She was one of the organizers of a recent meeting they held on scholarly communication.

Sabeeha Sabanali Merchant is a professor of plant biology at the University of California, Berkeley. She studies the photosynthetic metabolism and metalloenzymes In 2010 Merchant led the team that sequenced the Chlamydomonas genome. She was elected a member of the National Academy of Sciences in 2012.

Edwin W. Taylor is an adjunct professor of cell and developmental biology at Northwestern University. He was elected to the National Academy of Sciences in 2001. Taylor received a BA in physics and chemistry from the University of Toronto in 1952; an MSc in physical chemistry from McMaster University in 1955, and a PhD in biophysics from the University of Chicago in 1957. In 2001 Taylor was elected to the National Academy of Scineces in Cellular and Developmental Biology and Biochemistry.

<span class="mw-page-title-main">Protist locomotion</span> Motion system of a type of eukaryotic organism

Protists are the eukaryotes that cannot be classified as plants, fungi or animals. They are mostly unicellular and microscopic. Many unicellular protists, particularly protozoans, are motile and can generate movement using flagella, cilia or pseudopods. Cells which use flagella for movement are usually referred to as flagellates, cells which use cilia are usually referred to as ciliates, and cells which use pseudopods are usually referred to as amoeba or amoeboids. Other protists are not motile, and consequently have no built-in movement mechanism.

Elizabeth Anne Specht is an American research scientist who is Vice President for Science and Technology at The Good Food Institute. She leads the development of a roadmap for the acceleration of alternative protein research. In 2022, Vox named her in one of their "Future Perfect 50".

References

  1. "Co-Founders". www.arcadia.science. Archived from the original on 10 January 2022. Retrieved 11 September 2023.
  2. "Prachee Avasthi Explores How Cells Build and Maintain Cilia". The Scientist Magazine®. Retrieved 15 July 2019.
  3. "People". Avasthi Lab. 8 May 2015. Retrieved 15 July 2019.
  4. "Bio: Prachee Avasthi". rescuingbiomedicalresearch.org. Retrieved 15 July 2019.
  5. "People | Laboratory of Cell Geometry - Wallace Marshall, UCSF". cellgeometry.ucsf.edu. Retrieved 15 July 2019.
  6. "Prachee Avasthi's passion for supporting her peers leads to her selection as the first early career researcher on eLife's Board of Directors". www.kumc.edu. Archived from the original on 15 July 2019. Retrieved 15 July 2019.
  7. Avasthi P, Marley A, Lin H, Gregori-Puigjane E, Shoichet BK, von Zastrow M, Marshall WF (May 2012). "A chemical screen identifies class a g-protein coupled receptors as regulators of cilia". ACS Chemical Biology. 7 (5): 911–9. doi:10.1021/cb200349v. PMC   3356477 . PMID   22375814.
  8. 1 2 3 Avasthi P, Onishi M, Karpiak J, Yamamoto R, Mackinder L, Jonikas MC, et al. (September 2014). "Actin is required for IFT regulation in Chlamydomonas reinhardtii". Current Biology. 24 (17): 2025–32. doi:10.1016/j.cub.2014.07.038. PMC   4160380 . PMID   25155506.
  9. 1 2 "Prachee Avasthi • iBiology". iBiology. Retrieved 15 July 2019.
  10. "Live Q&A: Prioritizing Experiments With Prachee Avasthi • iBiology". iBiology. Retrieved 15 July 2019.
  11. "New PI Slack". New PI Slack. Retrieved 15 July 2019.
  12. Khan, Aziz (8 February 2019). "New PI Slack Community by Prachee Avasthi". ECRcentral.{{cite web}}: |access-date= requires |url= (help); Missing or empty |url= (help)[ permanent dead link ]
  13. Agbas, Baki. "Prachee Avasthi". ASAPbio. Retrieved 15 July 2019.
  14. wesupportpreprints (23 May 2018). "Prachee Avasthi". We support preprints... Retrieved 15 July 2019.
  15. "eLife welcomes early-career researcher to its Board of Directors". eLife. 11 January 2018. Retrieved 15 July 2019.
  16. Avasthi P, Soragni A, Bembenek JN (June 2018). "Journal clubs in the time of preprints". eLife. 7: e38532. doi: 10.7554/eLife.38532 . PMC   5995539 . PMID   29889024.