Poliovirus, the causative agent of polio, is a serotype of the species Enterovirus C, in the family of Picornaviridae.
Rhabdoviridae is a family of negative-strand RNA viruses in the order Mononegavirales. Vertebrates, invertebrates, and plants serve as natural hosts. Diseases associated with member viruses include rabies encephalitis caused by the rabies virus, and flu-like symptoms in humans caused by vesiculoviruses. The name is derived from Ancient Greek rhabdos, meaning rod, referring to the shape of the viral particles. The family has 40 genera, most assigned to three subfamilies.
Picornaviruses are a group of related nonenveloped RNA viruses which infect vertebrates including mammals and birds. They are viruses that represent a large family of small, positive-sense, single-stranded RNA viruses with a 30-nm icosahedral capsid. The viruses in this family can cause a range of diseases including the common cold, poliomyelitis, meningitis, hepatitis, and paralysis.
Plant viruses are viruses that affect plants. Like all other viruses, plant viruses are obligate intracellular parasites that do not have the molecular machinery to replicate without a host. Plant viruses can be pathogenic to higher plants.
Dicistroviridae is a family of viruses in the order Picornavirales. Invertebrates, including aphids, leafhoppers, flies, bees, ants, and silkworms, serve as natural hosts. There are 15 species in this family, assigned to three genera. Diseases associated with this family include: DCV: increased reproductive potential. extremely pathogenic when injected with high associated mortality. CrPV: paralysis and death.
Baculoviridae is a family of viruses. Arthropods, lepidoptera, hymenoptera, and diptera serve as natural hosts. There are 85 known species in this family, assigned to four genera.
An internal ribosome entry site, abbreviated IRES, is an RNA element that allows for translation initiation in cap-independent manner, as part of the greater process of protein synthesis. In prokaryotic translation, initiation typically occurs at the 5' end of rRNA molecules, since 5' cap recognition is required for the assembly of the initiation complex. The location for IRES elements is often in the 5'UTR, but can also occur elsewhere in tRNAs.
Ribosome shunting is a mechanism of translation initiation in which ribosomes bypass, or "shunt over", parts of the 5' untranslated region to reach the start codon. However, a benefit of ribosomal shunting is that it can translate backwards allowing more information to be stored than usual in an mRNA molecule. Some viral RNAs have been shown to use ribosome shunting as a more efficient form of translation during certain stages of viral life cycle or when translation initiation factors are scarce. Some viruses known to use this mechanism include adenovirus, Sendai virus, human papillomavirus, duck hepatitis B pararetrovirus, rice tungro bacilliform viruses, and cauliflower mosaic virus. In these viruses the ribosome is directly translocated from the upstream initiation complex to the start codon (AUG) with the help of certain proteins.
A viroplasm, sometimes called 'virus factory' or 'virus inclusion'. is an inclusion body in a cell where viral replication and assembly occurs. They may be thought of as viral factories in the cell. There are many viroplasms in one infected cell, where they appear dense to electron microscopy. Very little is understood about the mechanism of viroplasm formation.
The Cripavirus internal ribosome entry site is an RNA element required for the production of capsid proteins through ribosome recruitment to an intergenic region IRES.
This family represents the internal ribosome entry site (IRES) of the hepatitis A virus. HAV IRES is a 450 nucleotide long sequence located in the 735 nt long 5’ UTR of Hepatitis A viral RNA genome. IRES elements allow cap and end-independent translation of mRNA in the host cell. The IRES achieves this by mediating the internal initiation of translation by recruiting a ribosomal 40S pre-initiation complex directly to the initiation codon and eliminates the requirement for eukaryotic initiation factor, eIF4F.
This family represents the Picornavirus internal ribosome entry site (IRES) element present in their 5' untranslated region. These elements were discovered in picornaviruses. They are cis-acting RNA sequences that adopt diverse three-dimensional structures, recruit the translation machinery and that often operate in association with specific RNA-binding proteins. IRES elements allow cap and end-independent translation of mRNA in the host cell. It has been found that La autoantigen (La) is required for Coxsackievirus B3 (CVB3) IRES-mediated translation, and it has been suggested that La may be required for the efficient translation of the viral RNA in the pancreas. Based on their secondary structure, picornavirus IRES are grouped into four main types. Type I comprises enteroand rhinovirus IRES and type II, those of cardio- and aphthovirus, among others. Type III is used to name hepatitis A IRES.
Wheat yellow leaf virus (WYLV) is a wheat, barley, rye, and oat pathogenic virus of the family Closteroviridae. WYLV virions are 1600–1850 nm in length and 10 nm in diameter. The virus, like other members of its genus, is transmitted by aphids. Identified vectors include Rhopalosiphum padi L. and R. maidis Fitch. (Aphididae). The virus has been identified in crop plants in Japan, China, and Italy. Native host plants include Italian ryegrass in Europe and Agropyron tsukushiense var. transiens Ohwi in Japan. The virus proliferates in the phloem of its host plants, interfering with the plant's ability to produce sufficient chlorophyll (Chlorosis), causing the leaves to yellow and the plant to die.
Red clover necrotic mosaic virus (RCNMV) contains several structural elements present within the 3′ and 5′ untranslated regions (UTR) of the genome that enhance translation. In eukaryotes transcription is a prerequisite for translation. During transcription the pre-mRNA transcript is processes where a 5′ cap is attached onto mRNA and this 5′ cap allows for ribosome assembly onto the mRNA as it acts as a binding site for the eukaryotic initiation factor eIF4F. Once eIF4F is bound to the mRNA this protein complex interacts with the poly(A) binding protein which is present within the 3′ UTR and results in mRNA circularization. This multiprotein-mRNA complex then recruits the ribosome subunits and scans the mRNA until it reaches the start codon. Transcription of viral genomes differs from eukaryotes as viral genomes produce mRNA transcripts that lack a 5’ cap site. Despite lacking a cap site viral genes contain a structural element within the 5’ UTR known as an internal ribosome entry site (IRES). IRES is a structural element that recruits the 40s ribosome subunit to the mRNA within close proximity of the start codon.
Cripavirus is a genus of viruses in the order Picornavirales, in the family Dicistroviridae. Invertebrates serve as natural hosts. There are four species in this genus. Diseases associated with this genus include: DCV: increased reproductive potential; extremely pathogenic when injected with high associated mortality; CrPV: paralysis and death. These viruses can produce proteins directly from their RNA genome upon entering a cell; and therefore, does not require an RNA polymerase packaged in with it, as this may be produced from the genome after entering the cell. The name of the cripavirus family originates from its most famous member the Cricket Paralysis Virus. Which was made famous by its rather unusual IRES : the Cripavirus IRES. The Cripavirus IRES is an RNA element that allows the virus to bind the ribosome and translate without a need for any initiation factors – as initiation is the most regulated step of translation this allows the virus to avoid many mechanisms to inhibit viral activity.
Cricket paralysis virus (CrPV) was initially discovered in Australian field crickets by Carl Reinganum and his colleagues at the Victorian Plant Research Institute. The paralytic disease spread rapidly through a breeding colony as well as through a laboratory population causing about 95% mortality. This was the first recorded isolate of the virus and is generally referred to as CrPVvic to distinguish it from subsequent isolates.
Rhopalosiphum maidis, common names corn leaf aphid and corn aphid, is an insect, and a pest of maize and other crops. It has a nearly worldwide distribution and is typically found in agricultural fields, grasslands, and forest-grassland zones. Among aphids that feed on maize, it is the most commonly encountered and most economically damaging, particularly in tropical and warmer temperate areas. In addition to maize, R. maidis damages rice, sorghum, and other cultivated and wild monocots.
In molecular biology, a cap-independent translation element is an RNA sequence found in the 3'UTR of many RNA plant viruses.
Rhopalosiphum rufiabdominale, the rice root aphid or red rice root aphid, is a sap-sucking insect pest with a wide host range and a global distribution. As a member of the superfamily Aphidoidea, it is one of 16 species of the genus Rhopalosiphum. Adults and nymphs are soft-bodied and usually dark green with brown, red, or yellow tones. Like all aphids, reproduction is sexual and asexual, depending on the environmental conditions and host plant. Rice root aphids cause injury to external plant parts, namely the roots or stem, by feeding on plant sap and vector several important plant viruses. The hosts of this pest extend across multiple plant families with most belonging to Rosaceae, Poaceae, and Solanaceae. R. rufiabdominale is universally associated with Prunus species but also infests various field crops, greenhouse vegetables, cannabis, and other ornamental plants. While this aphid originates from east Asia, it spans nearly every continent. Dispersal is particularly widespread across the United States, India, and Australia, with crop damage documented in multiple instances, although economic losses are primarily associated with Japanese rice crops. Nonetheless, it remains a pest of serious concern due to its high mobility, discrete habitat, and adaptive plasticity, giving it the rightful reputation as a successful invader.
Positive-strand RNA viruses are a group of related viruses that have positive-sense, single-stranded genomes made of ribonucleic acid. The positive-sense genome can act as messenger RNA (mRNA) and can be directly translated into viral proteins by the host cell's ribosomes. Positive-strand RNA viruses encode an RNA-dependent RNA polymerase (RdRp) which is used during replication of the genome to synthesize a negative-sense antigenome that is then used as a template to create a new positive-sense viral genome.
