Runt domain

Last updated
Runt domain
Identifiers
SymbolRunt
Pfam PF00853
InterPro IPR013524
SCOP2 1cmo / SCOPe / SUPFAM
Available protein structures:
Pfam   structures / ECOD  
PDB RCSB PDB; PDBe; PDBj
PDBsum structure summary
PDB 1eaq A:48-182 1hjb C:60-182 1hjc D:60-182

1io4 C:60-182 1eao A:48-182 1ean A:48-182 1e50 E:50-182 1co1 A:61-175 1h9d C:50-182

Contents

1ljm B:51-181 1cmo A:52-178

The Runt domain is an evolutionary conserved protein domain. [1] The AML1/RUNX1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia. [2] The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene. [2] The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction.

In addition to the highly conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters.

The protein is a heterodimer of alpha- and beta-subunits. The alpha-subunit binds DNA as a monomer, and appears to have a role in the development of normal hematopoiesis. CBF is a nuclear protein expressed in numerous tissue types, except brain and heart; highest levels have been found to occur in thymus, bone marrow and peripheral blood.

This domain occurs towards the N-terminus of the proteins in this entry.

Examples

Human genes encoding proteins containing this domain include:

See also

Related Research Articles

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<span class="mw-page-title-main">RUNX3</span> Protein-coding gene in humans

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<span class="mw-page-title-main">GATA2</span> Protein-coding gene in the species Homo sapiens

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<span class="mw-page-title-main">CBFB</span> Protein-coding gene in the species Homo sapiens

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<span class="mw-page-title-main">KAT6A</span> Protein-coding gene in the species Homo sapiens

K(lysine) acetyltransferase 6A (KAT6A), is an enzyme that, in humans, is encoded by the KAT6A gene. This gene is located on human chromosome 8, band 8p11.21.

<span class="mw-page-title-main">CBFA2T2</span> Protein-coding gene in the species Homo sapiens

Protein CBFA2T2 is a protein that in humans is encoded by the CBFA2T2 gene.

<span class="mw-page-title-main">CBFA2T3</span> Protein-coding gene in the species Homo sapiens

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<span class="mw-page-title-main">MYND zinc finger</span>

In molecular biology the MYND-type zinc finger domain is a conserved protein domain. The MYND domain is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface.

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References

  1. Kagoshima H, Shigesada K, Satake M, Ito Y, Miyoshi H, Ohki M, Pepling M, Gergen P (October 1993). "The Runt domain identifies a new family of heteromeric transcriptional regulators". Trends Genet. 9 (10): 338–41. doi:10.1016/0168-9525(93)90026-E. PMID   8273148.
  2. 1 2 Hirai H, Shimizu K, Miyoshi H, Ohira M, Mitani K, Imai T, Yokoyama K, Soeda E, Ohki M (1995). "Alternative splicing and genomic structure of the AML1 gene involved in acute myeloid leukemia". Nucleic Acids Res. 23 (14): 2762–2769. doi:10.1093/nar/23.14.2762. PMC   307102 . PMID   7651838.
This article incorporates text from the public domain Pfam and InterPro: IPR013524