Sequence-related amplified polymorphism

A sequence related amplified polymorphism (SRAP) is a molecular technique, developed by G. Li and C. F. Quiros in 2001, ^[1] for detecting genetic variation in the open reading frames (ORFs) of genomes of plants and related organisms. ^[2]

See also

• Inclusive composite interval mapping
• Microsatellite (genetics)
• Molecular computational identification
• Molecular marker
• RAPD
• Sequence profiling tool

References

1. Kole 2007, p. 88.
2. Li & Quiros 2001, pp. 455–461.

Sources

• Kole, Chittaranjan (2007). "Molecular Markers and Genetic Mapping". Oilseeds. Vol. 2 of Genome Mapping and Molecular Breeding in Plants. Springer. p. 88. ISBN   978-3540343875.
• Li, G.; Quiros, C. F. (2001). "Sequence Related Amplified Polymorphism (SRAP) A New Marker System Based on a Simple PCR Reaction: Its Application to Mapping and Gene Tagging in Brassica". Theoretical and Applied Genetics . 103 (2–3): 455–461. doi:10.1007/s001220100570. S2CID   3362269.

Further reading

Books

• Kidwell, K. K.; Osborn, T. C. (1992). "Simple Plant DNA Isolation Procedures". In Beckman, J. S.; Osborn, T. C. (eds.). Plant Ggenomes: Methods for Genetic and Physical Mapping. Amsterdam, the Netherlands: Kluwer Academic Publishers. pp. 1–13.
• Tegelstrom, H. (1992). "Detection of Mitochondrial DNA Fragments". In Hoelzel, A. R. (ed.). Molecular Genetic Analysis of Populations: A Practical Approach. Oxford: IRL Press. pp. 89–114.

Articles and journals

• Broude, Natalia E.; Chandra, Abha; Smith, Cassandra L. (1997). "Differential Display of Genome Subsets Containing Specific Interspersed Repeats". Proceedings of the National Academy of Sciences of the United States of America . 94 (9): 4548–4553. Bibcode:1997PNAS...94.4548B. doi: 10.1073/pnas.94.9.4548 . PMC   20760 . PMID   9114027.
• Brown, Allan F.; Jeffery, Elizabeth H.; Juvik, John (2007). "A Polymerase Chain Reaction-based Linkage Map of Broccoli and Identification of Quantitative Trait Loci Associated with Harvest Date and Head Weight" (PDF). Journal of the American Society for Horticultural Science. 4 (132): 507–513. doi: 10.21273/JASHS.132.4.507 .
• Dicks, J.; Anderson, M.; Cardle, L.; Cartinhour, S.; Couchman, M.; Davenport, G.; Dickson, J.; Gale, M.; Marshall, D.; May, S.; Mcwilliam, H.; O’Malia, A.; Ougham, H.; Trick, M.; Walsh, S.; Waugh, R. (2000). "UK CropNet: A Collection of Databases and Bioinformatics Resources for Crop Plant Genomics". Nucleic Acids Research. 28 (1): 104–107. doi:10.1093/nar/28.1.104. PMC   102397 . PMID   10592194.
• Doyle, J. J.; Doyle, J. L. (1987). "A Rapid DNA Isolation Procedure for Small Quantities of Fresh Leaf Tissue". Phytochemical Bulletin. 19: 11–15.
• Kosambi, D. (1944). "The Estimation of Map Distances from Recombination Values". Annals of Eugenics. 12: 172–175. doi: 10.1111/j.1469-1809.1943.tb02321.x .
• Lander, E. S.; Green, P.; Abrahamson, J.; Barlow, A.; Daly, M. J.; Lincoln, S. E.; Newburg, L. (October 1987). "MAPMAKER: An Interactive Computer Package for Constructing Primary Genetic Linkage Maps of Experimental and Natural Populations". Genomics . 1 (2): 174–181. doi:10.1016/0888-7543(87)90010-3. PMID   3692487.
• Li, Huihui; Ribaut, Jean-Marcel; Li, Zhonglai; Wang, Jiankang (2008). "Inclusive Composite Interval Mapping (ICIM) for digenic epistasis of quantitative traits in biparental populations". Theoretical and Applied Genetics . 116 (2): 243–260. doi:10.1007/s00122-007-0663-5. PMID   17985112. S2CID   21798268.
• Quiros, C. F.; Grellet, F.; Sadowski, J.; Suzuki, T.; Li, G.; Wroblewski, T. (2001). "Arabidopsis and Brassica Comparative Sequence, Structure and Gene Content in the ABI1-Rps2-Ckl Chromosomal Segment and Related Regions". Genetics. 157 (3): 1321–1330. doi:10.1093/genetics/157.3.1321. PMC   1461565 . PMID   11238417.
• Saha, Gopesh; Sarkerb, Ashutosh; Chena, Weidong; Vandemarka, George J.; Muehlbauera, Fred J. (2010). "Inheritance and Linkage Map Positions of Genes Conferring Resistance to Stemphylium Blight in Lentil" . Crop Science. 50 (5). Crop Science Society of America: 1831–1839. doi:10.2135/cropsci2009.12.0709.
• Shapiro, S. S.; Wilk, M. B. (1965). "An Analysis of Variance Test for Normality (Complete Samples)". Biometrika . 52 (3–4): 591–611. doi:10.1093/biomet/52.3-4.591.
• Sharma, R.; Mahla, R. H.; Mohapatra, T.; Bhargava, C. S.; Shama, M. M. (2003). "Isolating Plant Genomic DNA Without Liquid Nitrogen". Plant Molecular Biology. 21: 43–50. doi:10.1007/bf02773395. S2CID   2893909.
• Shen, JunLing; Ni, HuiQun; Chen, XiaoYang; Huang, ShaoWei (2010). "Genetic Diversity of Jatropha Curcas With SRAP Molecular Markers". Journal of Zhejiang Forestry College. 27 (3): 347–353. ISSN   1000-5692.
• Sorkheh, K.; Shiran, B.; Kiani, S.; Amirbakhtiar, N.; Mousavi, S.; Rouhi, Vahid; Mohammady-d, Shahram; Gradziel, Thomas M.; Malysheva-Otto, Lyudmyla V.; Martínez-Gómez, Pedro (2009). "Discriminating Ability of Molecular Markers and Morphological Characterization in the Establishment of Genetic Relationships in Cultivates Genotypes of Almond and Related Weld Species". Journal of Forestry Research. 20 (3): 183–194. doi:10.1007/s11676-009-0036-9. S2CID   22190347.
• Williams, J. G. K.; Kubelik, A.R.; Livak, K.J.; Rafalski, J.A.; Tingey, S.V. (1990). "DNA Polymorphisms Amplified by Arbitrary Primers Are Useful as Genetic Markers". Nucleic Acids Research . 18 (22): 6531–6535. doi:10.1093/nar/18.22.6531. PMC   332606 . PMID   1979162.