USP47

USP47
Identifiers
Aliases	USP47 , TRFP, ubiquitin specific peptidase 47
External IDs	OMIM: 614460 MGI: 1922246 HomoloGene: 9929 GeneCards: USP47
Gene location (Human) Chr. Chromosome 11 (human) [1] Band 11p15.3 Start 11,841,423 bp [1] End 11,959,323 bp [1]
Gene location (Mouse) Chr. Chromosome 7 (mouse) [2] Band 7|7 F1 Start 111,622,711 bp [2] End 111,710,868 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in internal globus pallidus endothelial cell secondary oocyte seminal vesicula vena cava corpus callosum biceps brachii periodontal fiber inferior olivary nucleus Achilles tendon Top expressed in ciliary body vastus lateralis muscle triceps brachii muscle spermatid gastrocnemius muscle tibialis anterior muscle ankle spermatocyte temporal muscle sternocleidomastoid muscle More reference expression data BioGPS More reference expression data
Gene ontology Molecular function WD40-repeat domain binding peptidase activity hydrolase activity cysteine-type peptidase activity thiol-dependent deubiquitinase protein binding deubiquitinase activity cysteine-type endopeptidase activity Cellular component cytoplasm SCF ubiquitin ligase complex nucleoplasm cytosol Biological process ubiquitin-dependent protein catabolic process proteolysis negative regulation of apoptotic process cellular response to UV negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage DNA repair positive regulation of cell growth monoubiquitinated protein deubiquitination base-excision repair negative regulation of G2/M transition of mitotic cell cycle negative regulation of transcription, DNA-templated negative regulation of cysteine-type endopeptidase activity involved in apoptotic process cellular response to DNA damage stimulus protein deubiquitination positive regulation of canonical Wnt signaling pathway regulation of protein stability Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 55031 74996 Ensembl ENSG00000170242 ENSMUSG00000059263 UniProt Q96K76 Q8BY87 RefSeq (mRNA) NM_001282659 NM_017944 NM_001330208 NM_133758 NM_177249 NM_001357952 RefSeq (protein) NP_001269588 NP_001317137 NP_060414 NP_001359020 NP_001359021 NP_001359022 NP_001359023 NP_001359024 NP_001359025 NP_001359026 NP_001359027 NP_001359028 NP_001359029 NP_001359030 NP_001359031 NP_001359032 NP_598519 NP_796223 NP_001344881 NP_001390423 Location (UCSC) Chr 11: 11.84 – 11.96 Mb Chr 7: 111.62 – 111.71 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Ubiquitin carboxyl-terminal hydrolase 47 is an enzyme that in humans is encoded by the USP47 gene. ^{[5] [6]}

References

1. GRCh38: Ensembl release 89: ENSG00000170242 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000059263 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Puente XS, Sanchez LM, Overall CM, Lopez-Otin C (Jul 2003). "Human and mouse proteases: a comparative genomic approach". Nat Rev Genet. 4 (7): 544–58. doi:10.1038/nrg1111. PMID   12838346. S2CID   2856065.
6. "Entrez Gene: USP47 ubiquitin specific peptidase 47".

Further reading

• Maruyama K, Sugano S (1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID   8125298.
• Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, et al. (1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID   9373149.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC   139241 . PMID   12477932.
• Sato S, Tomomori-Sato C, Banks CA, et al. (2003). "Identification of mammalian Mediator subunits with similarities to yeast Mediator subunits Srb5, Srb6, Med11, and Rox3". J. Biol. Chem. 278 (17): 15123–7. doi: 10.1074/jbc.C300054200 . PMID   12584197.
• Sato S, Tomomori-Sato C, Banks CA, et al. (2004). "A mammalian homolog of Drosophila melanogaster transcriptional coactivator intersex is a subunit of the mammalian Mediator complex". J. Biol. Chem. 278 (50): 49671–4. doi: 10.1074/jbc.C300444200 . PMID   14576168.
• Tomomori-Sato C, Sato S, Parmely TJ, et al. (2004). "A mammalian mediator subunit that shares properties with Saccharomyces cerevisiae mediator subunit Cse2". J. Biol. Chem. 279 (7): 5846–51. doi: 10.1074/jbc.M312523200 . PMID   14638676.
• Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi: 10.1038/ng1285 . PMID   14702039.
• Quesada V, Díaz-Perales A, Gutiérrez-Fernández A, et al. (2004). "Cloning and enzymatic analysis of 22 novel human ubiquitin-specific proteases". Biochem. Biophys. Res. Commun. 314 (1): 54–62. doi:10.1016/j.bbrc.2003.12.050. PMID   14715245.
• Beausoleil SA, Jedrychowski M, Schwartz D, et al. (2004). "Large-scale characterization of HeLa cell nuclear phosphoproteins". Proc. Natl. Acad. Sci. U.S.A. 101 (33): 12130–5. Bibcode:2004PNAS..10112130B. doi: 10.1073/pnas.0404720101 . PMC   514446 . PMID   15302935.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC   528928 . PMID   15489334.
• Beausoleil SA, Villén J, Gerber SA, et al. (2006). "A probability-based approach for high-throughput protein phosphorylation analysis and site localization". Nat. Biotechnol. 24 (10): 1285–92. doi:10.1038/nbt1240. PMID   16964243. S2CID   14294292.