Upstream open reading frame

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An upstream open reading frame (uORF) is an open reading frame (ORF) within the 5' untranslated region (5'UTR) of an mRNA. uORFs can regulate eukaryotic gene expression. [1] [2] Translation of the uORF typically inhibits downstream expression of the primary ORF. However, in some genes such as yeast GCN4, translation of specific uORFs may increase translation of the main ORF. [3]

Contents

In humans

Approximately 50% of human genes contain uORFs in their 5'UTR, and when present, these cause reductions in protein expression. [4] Human peptides derived from translated uORFs can be detected from cellular material with a mass spectrometer. [5] uORFs were found in two thirds of proto-oncogenes and related proteins. [6]

In bacteria

In bacteria, uORFs are called leader peptides and were originally discovered on the basis of their impact on the regulation of genes involved in the synthesis or transport of amino acids.

See also

References

  1. ↑ Vilela C, McCarthy JE (August 2003). "Regulation of fungal gene expression via short open reading frames in the mRNA 5'untranslated region". Molecular Microbiology. 49 (4): 859–67. doi: 10.1046/j.1365-2958.2003.03622.x . PMID   12890013.
  2. ↑ Lovett PS, Rogers EJ (June 1996). "Ribosome regulation by the nascent peptide". Microbiological Reviews. 60 (2): 366–85. doi: 10.1128/MMBR.60.2.366-385.1996 . PMC   239448 . PMID   8801438.
  3. ↑ Hinnebusch, Alan G. (1997-08-29). "Translational Regulation of Yeast GCN4: A window on factors that control initiator-tRNA binding to the ribosome *". Journal of Biological Chemistry. 272 (35): 21661–21664. doi: 10.1074/jbc.272.35.21661 . ISSN   0021-9258. PMID   9268289.
  4. ↑ Calvo SE, Pagliarini DJ, Mootha VK (May 2009). "Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans" (PDF). Proceedings of the National Academy of Sciences of the United States of America. 106 (18): 7507–12. Bibcode: 2009PNAS..106.7507C . doi: 10.1073/pnas.0810916106 . PMC   2669787 . PMID   19372376. Archived from the original on Dec 3, 2023 – via MIT Libraries.
  5. ↑ Slavoff SA, Mitchell AJ, Schwaid AG, Cabili MN, Ma J, Levin JZ, Karger AD, Budnik BA, Rinn JL, Saghatelian A (January 2013). "Peptidomic discovery of short open reading frame-encoded peptides in human cells". Nature Chemical Biology. 9 (1): 59–64. doi:10.1038/nchembio.1120. PMC   3625679 . PMID   23160002.
  6. ↑ Geballe, A. P.; Morris, D. R. (April 1994). "Initiation codons within 5'-leaders of mRNAs as regulators of translation". Trends in Biochemical Sciences. 19 (4): 159–164. doi:10.1016/0968-0004(94)90277-1. ISSN   0968-0004. PMID   8016865.
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