Xenopus egg extract

Last updated

Xenopus egg extract is a lysate that is prepared by crushing the eggs of the African clawed frog Xenopus laevis . It offers a powerful cell-free (or in vitro) system for studying various cell biological processes, including cell cycle progression, nuclear transport, DNA replication and chromosome segregation. It is also called Xenopus egg cell-free system or Xenopus egg cell-free extract.

Contents

History

The first frog egg extract was reported in 1983 by Lohka and Masui. [1] This pioneering work used eggs of the Northern leopard frog Rana pipiens to prepare an extract. Later, the same procedure was applied to eggs of Xenopus laevis , becoming popular for studying cell cycle progression and cell cycle-dependent cellular events. [2] Extracts derived from eggs of the Japanese common toad Bufo japonicus [3] or of the Western clawed frog Xenopus tropicalis [4] have also been reported.

Basics of extract preparation

The cell cycle of unfertilized eggs of X. laevis is arrested highly synchronously at metaphase of meiosis II. Upon fertilization, the metaphase arrest is released by the action of Ca2+ ions released from the endoplasmic reticulum, thereby initiating early embryonic cell cycles that alternates S phase (DNA replication) and M phase (mitosis). [5]

M phase extract

Figure 1. An egg extract is prepared by crushing X. laevis eggs by centrifugation Extracts2E.png
Figure 1. An egg extract is prepared by crushing X. laevis eggs by centrifugation

Unfertilized eggs in a buffer containing the Ca2+ chelator EGTA (ethylene glycol tetraacetic acid) are packed into a centrifuge tube. After removing excess buffer, the eggs are crushed by centrifugation (~10,000 g). A soluble fraction that appears between the lipid cap and the yolk is called an M phase extract. This extract contains a high level of cyclin B-Cdk1. When demembranated sperm nuclei are incubated with this extract, it undergoes a series of structural changes and is eventually converted into a set of M phase chromosomes with bipolar spindles.

Interphase (S phase) extract

Different types of egg extracts

Cycling extract

Figure 2. An interphase nucleus (left) and a cluster of mitotic chromosomes (right) produced in a cycling extract. Bar, 10 mm. Nucleus-chromosomes.png
Figure 2. An interphase nucleus (left) and a cluster of mitotic chromosomes (right) produced in a cycling extract. Bar, 10 μm.

High-speed supernatant (HSS)

Nucleoplasmic extract (NPE)

Discoveries made using egg extracts

More recently, the egg extracts have been used to study reprogramming of differentiated nuclei, [17] physical properties of spindles [18] and nuclei, [19] and theoretical understanding of cell cycle control. [20]

See also

Related Research Articles

<span class="mw-page-title-main">Cell cycle</span> Series of events and stages that result in cell division

The cell cycle, or cell-division cycle, is the series of events that take place in a cell that causes it to divide into two daughter cells. These events include the duplication of its DNA and some of its organelles, and subsequently the partitioning of its cytoplasm, chromosomes and other components into two daughter cells in a process called cell division.

<span class="mw-page-title-main">Cell division</span> Process by which living cells divide

Cell division is the process by which a parent cell divides into two daughter cells. Cell division usually occurs as part of a larger cell cycle in which the cell grows and replicates its chromosome(s) before dividing. In eukaryotes, there are two distinct types of cell division: a vegetative division (mitosis), producing daughter cells genetically identical to the parent cell, and a cell division that produces haploid gametes for sexual reproduction (meiosis), reducing the number of chromosomes from two of each type in the diploid parent cell to one of each type in the daughter cells. Mitosis is a part of the cell cycle, in which, replicated chromosomes are separated into two new nuclei. Cell division gives rise to genetically identical cells in which the total number of chromosomes is maintained. In general, mitosis is preceded by the S stage of interphase and is followed by telophase and cytokinesis; which divides the cytoplasm, organelles, and cell membrane of one cell into two new cells containing roughly equal shares of these cellular components. The different stages of mitosis all together define the M phase of an animal cell cycle—the division of the mother cell into two genetically identical daughter cells. To ensure proper progression through the cell cycle, DNA damage is detected and repaired at various checkpoints throughout the cycle. These checkpoints can halt progression through the cell cycle by inhibiting certain cyclin-CDK complexes. Meiosis undergoes two divisions resulting in four haploid daughter cells. Homologous chromosomes are separated in the first division of meiosis, such that each daughter cell has one copy of each chromosome. These chromosomes have already been replicated and have two sister chromatids which are then separated during the second division of meiosis. Both of these cell division cycles are used in the process of sexual reproduction at some point in their life cycle. Both are believed to be present in the last eukaryotic common ancestor.

<span class="mw-page-title-main">Spindle apparatus</span> Feature of biological cell structure

In cell biology, the spindle apparatus is the cytoskeletal structure of eukaryotic cells that forms during cell division to separate sister chromatids between daughter cells. It is referred to as the mitotic spindle during mitosis, a process that produces genetically identical daughter cells, or the meiotic spindle during meiosis, a process that produces gametes with half the number of chromosomes of the parent cell.

<span class="mw-page-title-main">Telophase</span> Final stage of a cell division for eukaryotic cells both in mitosis and meiosis

Telophase is the final stage in both meiosis and mitosis in a eukaryotic cell. During telophase, the effects of prophase and prometaphase are reversed. As chromosomes reach the cell poles, a nuclear envelope is re-assembled around each set of chromatids, the nucleoli reappear, and chromosomes begin to decondense back into the expanded chromatin that is present during interphase. The mitotic spindle is disassembled and remaining spindle microtubules are depolymerized. Telophase accounts for approximately 2% of the cell cycle's duration.

<span class="mw-page-title-main">Anaphase-promoting complex</span> Cell-cycle regulatory complex

Anaphase-promoting complex is an E3 ubiquitin ligase that marks target cell cycle proteins for degradation by the 26S proteasome. The APC/C is a large complex of 11–13 subunit proteins, including a cullin (Apc2) and RING (Apc11) subunit much like SCF. Other parts of the APC/C have unknown functions but are highly conserved.

<span class="mw-page-title-main">Cyclin</span> Group of proteins

Cyclins are proteins that control the progression of a cell through the cell cycle by activating cyclin-dependent kinases (CDK).

Maturation-promoting factor (abbreviated MPF, also called mitosis-promoting factor or M-Phase-promoting factor) is the cyclin–Cdk complex that was discovered first in frog eggs. It stimulates the mitotic and meiotic phases of the cell cycle. MPF promotes the entrance into mitosis (the M phase) from the G2 phase by phosphorylating multiple proteins needed during mitosis. MPF is activated at the end of G2 by a phosphatase, which removes an inhibitory phosphate group added earlier.

<span class="mw-page-title-main">Condensin</span> Protein complex

Condensins are large protein complexes that play a central role in chromosome assembly and segregation during mitosis and meiosis. Their subunits were originally identified as major components of mitotic chromosomes assembled in Xenopus egg extracts.

<span class="mw-page-title-main">Spindle checkpoint</span> Cell cycle checkpoint

The spindle checkpoint, also known as the metaphase-to-anaphase transition, the spindle assembly checkpoint (SAC), the metaphase checkpoint, or the mitotic checkpoint, is a cell cycle checkpoint during metaphase of mitosis or meiosis that prevents the separation of the duplicated chromosomes (anaphase) until each chromosome is properly attached to the spindle. To achieve proper segregation, the two kinetochores on the sister chromatids must be attached to opposite spindle poles. Only this pattern of attachment will ensure that each daughter cell receives one copy of the chromosome. The defining biochemical feature of this checkpoint is the stimulation of the anaphase-promoting complex by M-phase cyclin-CDK complexes, which in turn causes the proteolytic destruction of cyclins and proteins that hold the sister chromatids together.

G<sub>2</sub> phase Second growth phase in the eukaryotic cell cycle, prior to mitosis

G2 phase, Gap 2 phase, or Growth 2 phase, is the third subphase of interphase in the cell cycle directly preceding mitosis. It follows the successful completion of S phase, during which the cell’s DNA is replicated. G2 phase ends with the onset of prophase, the first phase of mitosis in which the cell’s chromatin condenses into chromosomes.

<span class="mw-page-title-main">Cell cycle checkpoint</span> Control mechanism in the eukaryotic cell cycle

Cell cycle checkpoints are control mechanisms in the eukaryotic cell cycle which ensure its proper progression. Each checkpoint serves as a potential termination point along the cell cycle, during which the conditions of the cell are assessed, with progression through the various phases of the cell cycle occurring only when favorable conditions are met. There are many checkpoints in the cell cycle, but the three major ones are: the G1 checkpoint, also known as the Start or restriction checkpoint or Major Checkpoint; the G2/M checkpoint; and the metaphase-to-anaphase transition, also known as the spindle checkpoint. Progression through these checkpoints is largely determined by the activation of cyclin-dependent kinases by regulatory protein subunits called cyclins, different forms of which are produced at each stage of the cell cycle to control the specific events that occur therein.

Cyclin A is a member of the cyclin family, a group of proteins that function in regulating progression through the cell cycle. The stages that a cell passes through that culminate in its division and replication are collectively known as the cell cycle Since the successful division and replication of a cell is essential for its survival, the cell cycle is tightly regulated by several components to ensure the efficient and error-free progression through the cell cycle. One such regulatory component is cyclin A which plays a role in the regulation of two different cell cycle stages.

A series of biochemical switches control transitions between and within the various phases of the cell cycle. The cell cycle is a series of complex, ordered, sequential events that control how a single cell divides into two cells, and involves several different phases. The phases include the G1 and G2 phases, DNA replication or S phase, and the actual process of cell division, mitosis or M phase. During the M phase, the chromosomes separate and cytokinesis occurs.

Cdc14 and Cdc14 are a gene and its protein product respectively. Cdc14 is found in most of the eukaryotes. Cdc14 was defined by Hartwell in his famous screen for loci that control the cell cycle of Saccharomyces cerevisiae. Cdc14 was later shown to encode a protein phosphatase. Cdc14 is dual-specificity, which means it has serine/threonine and tyrosine-directed activity. A preference for serines next to proline is reported. Many early studies, especially in the budding yeast Saccharomyces cerevisiae, demonstrated that the protein plays a key role in regulating late mitotic processes. However, more recent work in a range of systems suggests that its cellular function is more complex.

<span class="mw-page-title-main">Control of chromosome duplication</span>

In cell biology, eukaryotes possess a regulatory system that ensures that DNA replication occurs only once per cell cycle.

<span class="mw-page-title-main">G2-M DNA damage checkpoint</span>

The G2-M DNA damage checkpoint is an important cell cycle checkpoint in eukaryotic organisms that ensures that cells don't initiate mitosis until damaged or incompletely replicated DNA is sufficiently repaired. Cells with a defective G2-M checkpoint will undergo apoptosis or death after cell division if they enter the M phase before repairing their DNA. The defining biochemical feature of this checkpoint is the activation of M-phase cyclin-CDK complexes, which phosphorylate proteins that promote spindle assembly and bring the cell to metaphase.

Mitotic exit is an important transition point that signifies the end of mitosis and the onset of new G1 phase for a cell, and the cell needs to rely on specific control mechanisms to ensure that once it exits mitosis, it never returns to mitosis until it has gone through G1, S, and G2 phases and passed all the necessary checkpoints. Many factors including cyclins, cyclin-dependent kinases (CDKs), ubiquitin ligases, inhibitors of cyclin-dependent kinases, and reversible phosphorylations regulate mitotic exit to ensure that cell cycle events occur in correct order with fewest errors. The end of mitosis is characterized by spindle breakdown, shortened kinetochore microtubules, and pronounced outgrowth of astral (non-kinetochore) microtubules. For a normal eukaryotic cell, mitotic exit is irreversible.

<span class="mw-page-title-main">Jonathon Pines</span> British oncologist (born 1961)

Jonathon Noë Joseph Pines is Head of the Cancer Biology Division at the Institute of Cancer Research in London. He was formerly a senior group leader at the Gurdon Institute at the University of Cambridge.

Induced cell cycle arrest is the use of a chemical or genetic manipulation to artificially halt progression through the cell cycle. Cellular processes like genome duplication and cell division stop. It can be temporary or permanent. It is an artificial activation of naturally occurring cell cycle checkpoints, induced by exogenous stimuli controlled by an experimenter.

<span class="mw-page-title-main">Mary Dasso</span> American biochemist

Mary C. Dasso is an American biochemist known for research on chromosome segregation and the discovery of Ran GTPase. She is the acting scientific director of the division of intramural research and a senior investigator in the section on cell cycle regulation at the Eunice Kennedy Shriver National Institute of Child Health and Human Development.

References

  1. Lohka MJ, Masui Y (1983). "Formation in vitro of sperm pronuclei and mitotic chromosomes induced by amphibian ooplasmic components". Science. 220 (4598): 719–721. Bibcode:1983Sci...220..719L. doi:10.1126/science.6601299. PMID   6601299.
  2. Lohka MJ, Maller JL. (1985). "Induction of nuclear envelope breakdown, chromosome condensation, and spindle formation in cell-free extracts". J. Cell Biol. 101 (2): 518–523. doi:10.1083/jcb.101.2.518. PMC   2113692 . PMID   3926780.
  3. Ohsumi K, Katagiri C (1991). "Characterization of the ooplasmic factor inducing decondensation of and protamine removal from toad sperm nuclei: involvement of nucleoplasmin". Dev. Biol. 148 (1): 295–305. doi:10.1016/0012-1606(91)90338-4. PMID   1936566.
  4. Brown KS, Blower MD, Maresca TJ, Grammer TC, Harland RM, Heald R (2007). "Xenopus tropicalis egg extracts provide insight into scaling of the mitotic spindle". J. Cell Biol. 176 (6): 765–770. doi:10.1083/jcb.200610043. PMC   2064050 . PMID   17339377.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  5. Masui Y (2000). "The elusive cytostatic factor in the animal egg". Nat. Rev. Mol. Cell Biol. 1 (3): 228–232. doi:10.1038/35043096. PMID   11252899. S2CID   5303121.
  6. Lohka MJ, Hayes MK, Maller JL (1988). "Purification of maturation-promoting factor, an intracellular regulator of early mitotic events". Proc. Natl. Acad. Sci. USA. 85 (9): 3009–3013. Bibcode:1988PNAS...85.3009L. doi: 10.1073/pnas.85.9.3009 . PMC   280132 . PMID   3283736.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  7. Murray AW, Kirschner MW (1989). "Cyclin synthesis drives the early embryonic cell cycle". Nature. 339 (6222): 275–280. Bibcode:1989Natur.339..275M. doi:10.1038/339275a0. PMID   2566917. S2CID   4352582.
  8. Murray AW, Solomon MJ, Kirschner MW (1989). "The role of cyclin synthesis and degradation in the control of maturation promoting factor activity". Nature. 339 (6222): 280–286. Bibcode:1989Natur.339..280M. doi:10.1038/339280a0. PMID   2566918. S2CID   4319201.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  9. Holloway SL, Glotzer M, King RW, Murray AW (1993). "Anaphase is initiated by proteolysis rather than by the inactivation of maturation-promoting factor". Cell. 73 (7): 1393–1402. doi: 10.1016/0092-8674(93)90364-v . PMID   8391932. S2CID   26338475.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  10. Heald R, Tournebize R, Blank T, Sandaltzopoulos R, Becker P, Hyman A, Karsenti E (1996). "Self-organization of microtubules into bipolar spindles around artificial chromosomes in Xenopus egg extracts". Nature. 382 (6590): 420–425. Bibcode:1996Natur.382..420H. doi:10.1038/382420a0. PMID   8684481. S2CID   4238425.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  11. Blow JJ, Laskey RA (1988). "A role for the nuclear envelope in controlling DNA replication within the cell cycle". Nature. 332 (6164): 546–548. Bibcode:1988Natur.332..546B. doi:10.1038/332546a0. PMID   3357511. S2CID   4313693.
  12. Kubota Y, Mimura S, Nishimoto S, Takisawa H, Nojima H (1995). "Identification of the yeast MCM3-related protein as a component of Xenopus DNA replication licensing factor". Cell. 81 (4): 601–609. doi: 10.1016/0092-8674(95)90081-0 . PMID   7758114. S2CID   18797719.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  13. Görlich D, Prehn S, Laskey RA, Hartmann E (1994). "Isolation of a protein that is essential for the first step of nuclear protein import". Cell. 79 (5): 767–778. doi:10.1016/0092-8674(94)90067-1. PMID   8001116. S2CID   7539929.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  14. Hirano T, Mitchison TJ (1994). "A heterodimeric coiled-coil protein required for mitotic chromosome condensation in vitro". Cell. 79 (3): 449–458. doi:10.1016/0092-8674(94)90254-2. PMID   7954811. S2CID   24140495.
  15. Hirano T, Kobayashi R, Hirano M (1997). "Condensins, chromosome condensation protein complexes containing XCAP-C, XCAP-E and a Xenopus homolog of the Drosophila Barren protein". Cell. 89 (4): 511–521. doi: 10.1016/s0092-8674(00)80233-0 . PMID   9160743. S2CID   15061740.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  16. Losada A, Hirano M, Hirano T (1998). "Identification of Xenopus SMC protein complexes required for sister chromatid cohesion". Genes Dev. 12 (13): 1986–1997. doi:10.1101/gad.12.13.1986. PMC   316973 . PMID   9649503.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  17. Ganier O, Bocquet S, Peiffer I, Brochard V, Arnaud P, Puy A, Jouneau A, Feil R, Renard JP, Méchali M (2011). "Synergic reprogramming of mammalian cells by combined exposure to mitotic Xenopus egg extracts and transcription factors". Proc Natl Acad Sci USA. 108 (42): 17331–17336. doi: 10.1073/pnas.1100733108 . PMC   3198361 . PMID   21908712.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  18. Shimamoto Y, Maeda YT, Ishiwata S, Libchaber AJ, Kapoor TM (2011). "Insights into the micromechanical properties of the metaphase spindle". Cell. 145 (7): 767–778. doi:10.1016/j.cell.2011.05.038. PMC   3124677 . PMID   21703450.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  19. Hara Y, Merten CA (2015). "Dynein-based accumulation of membranes regulates nuclear expansion in Xenopus laevis egg extracts". Dev Cell. 33 (5): 562–575. doi: 10.1016/j.devcel.2015.04.016 . PMID   26004509.
  20. Pomerening JR, Kim SY, Ferrell JE Jr (2005). "Systems-level dissection of the cell-cycle oscillator: bypassing positive feedback produces damped oscillations". Cell. 122 (4): 565–578. doi: 10.1016/j.cell.2005.06.016 . PMID   16122424. S2CID   11835940.{{cite journal}}: CS1 maint: multiple names: authors list (link)