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The Digital Fish Library (DFL) is a University of California San Diego project funded by the Biological Infrastructure Initiative (DBI) of the National Science Foundation (NSF). The DFL creates 2D and 3D visualizations of the internal and external anatomy of fish obtained with magnetic resonance imaging (MRI) methods and makes these publicly available on the web. [1]
The information core for the Digital Fish Library is generated using high-resolution MRI scanners housed at the Center for functional magnetic resonance imaging (CfMRI) multi-user facility at UC San Diego. These instruments use magnetic fields to take 3D images of animal tissues, allowing researchers to non-invasively see inside them and quantitatively describe their 3D anatomy. Fish specimens are obtained from the Marine Vertebrate Collection at Scripps Institute of Oceanography (SIO) and imaged by staff from UC San Diego's Center for Scientific Computation in Imaging (CSCI).
As of February 2010, the Digital Fish Library contains almost 300 species covering all five classes of fish, 56 of 60 orders, and close to 200 of the 521 fish families as described by Nelson, 2006. [2] DFL imaging has also contributed to a number of published peer-reviewed scientific studies. [3]
Digital Fish Library work has been featured in the media, including two National Geographic documentaries: Magnetic Navigator [4] and Ultimate Shark. [5]
Magnetic resonance imaging (MRI) is a medical imaging technique used in radiology to form pictures of the anatomy and the physiological processes of the body. MRI scanners use strong magnetic fields, magnetic field gradients, and radio waves to generate images of the organs in the body. MRI does not involve X-rays or the use of ionizing radiation, which distinguishes it from CT and PET scans. MRI is a medical application of nuclear magnetic resonance (NMR) which can also be used for imaging in other NMR applications, such as NMR spectroscopy.
The Scripps Institution of Oceanography in San Diego, California, US founded in 1903, is one of the oldest and largest centers for ocean and Earth science research, public service, undergraduate and graduate training in the world. Hundreds of ocean and Earth scientists conduct research with the aid of oceanographic research vessels and shorebased laboratories. Its Old Scripps Building is a U.S. National Historic Landmark. SIO is a division of the University of California San Diego (UCSD). The public explorations center of the institution is the Birch Aquarium at Scripps. Since becoming part of the University of California in 1912, the institution has expanded its scope to include studies of the physics, chemistry, geology, biology, and climate of Earth.
Paul Christian Lauterbur was an American chemist who shared the Nobel Prize in Physiology or Medicine in 2003 with Peter Mansfield for his work which made the development of magnetic resonance imaging (MRI) possible.
Edward Mills Purcell was an American physicist who shared the 1952 Nobel Prize for Physics for his independent discovery of nuclear magnetic resonance in liquids and in solids. Nuclear magnetic resonance (NMR) has become widely used to study the molecular structure of pure materials and the composition of mixtures. Friends and colleagues knew him as Ed Purcell.
Raymond Vahan Damadian was an American physician, medical practitioner, and inventor of an NMR scanning machine.
Opahs, also commonly known as moonfish, sunfish, kingfish, redfin ocean pan are large, colorful, deep-bodied pelagic lampriform fishes comprising the small family Lampridae.
The National High Magnetic Field Laboratory (MagLab) is a facility at Florida State University, the University of Florida, and Los Alamos National Laboratory in New Mexico, that performs magnetic field research in physics, biology, bioengineering, chemistry, geochemistry, biochemistry. It is the only such facility in the US, and is among twelve high magnetic facilities worldwide. The lab is supported by the National Science Foundation and the state of Florida, and works in collaboration with private industry.
Magnetic resonance angiography (MRA) is a group of techniques based on magnetic resonance imaging (MRI) to image blood vessels. Magnetic resonance angiography is used to generate images of arteries in order to evaluate them for stenosis, occlusions, aneurysms or other abnormalities. MRA is often used to evaluate the arteries of the neck and brain, the thoracic and abdominal aorta, the renal arteries, and the legs.
Neuroimaging is the use of quantitative (computational) techniques to study the structure and function of the central nervous system, developed as an objective way of scientifically studying the healthy human brain in a non-invasive manner. Increasingly it is also being used for quantitative studies of brain disease and psychiatric illness. Neuroimaging is a highly multidisciplinary research field and is not a medical specialty.
Gadopentetic acid, sold under the brand name Magnevist, is a gadolinium-based MRI contrast agent.
Gadodiamide, sold under the brand name Omniscan, is a gadolinium-based MRI contrast agent (GBCA), used in magnetic resonance imaging (MRI) procedures to assist in the visualization of blood vessels.
During nuclear magnetic resonance observations, spin–lattice relaxation is the mechanism by which the longitudinal component of the total nuclear magnetic moment vector (parallel to the constant magnetic field) exponentially relaxes from a higher energy, non-equilibrium state to thermodynamic equilibrium with its surroundings (the "lattice"). It is characterized by the spin–lattice relaxation time, a time constant known as T1.
Cardiac magnetic resonance imaging, also known as cardiovascular MRI, is a magnetic resonance imaging (MRI) technology used for non-invasive assessment of the function and structure of the cardiovascular system. Conditions in which it is performed include congenital heart disease, cardiomyopathies and valvular heart disease, diseases of the aorta such as dissection, aneurysm and coarctation, coronary heart disease and it can be used to look at pulmonary veins.
Gadoteric acid, sold under the brand name Dotarem among others, is a macrocycle-structured gadolinium-based MRI contrast agent (GBCA). It consists of the organic acid DOTA as a chelating agent, and gadolinium (Gd3+), and is used in form of the meglumine salt (gadoterate meglumine). The paramagnetic property of gadoteric acid reduces the T1 relaxation time (and to some extent the T2 and T2* relaxation times) in MRI, which is the source of its clinical utility. Because it has magnetic properties, gadoteric acid develops a magnetic moment when put under a magnetic field, which increases the signal intensity (brightness) of tissues during MRI imaging.
RV Horizon, ex Auxiliary Fleet Tug ATA-180, was a Scripps Institution of Oceanography research vessel from 1949 through 1968. During that time she made 267 cruises and logging 610,522 miles (982,540 km) spending 4,207 days at sea.
Positron emission tomography–magnetic resonance imaging (PET–MRI) is a hybrid imaging technology that incorporates magnetic resonance imaging (MRI) soft tissue morphological imaging and positron emission tomography (PET) functional imaging.
Frank Edwin Snodgrass was a physical oceanographer and electrical engineer. He spent nearly all of his career working with Prof. Walter Munk at Scripps Institution of Oceanography (SIO). The Cecil H. and Ida M. Green branch of the University of California Systemwide Institute of Geophysics and Planetary Physics (IGPP), in La Jolla, California has been strongly linked to Scripps since the 1960s through joint faculty appointments, research interests, and shared facilities. Other IGPP branches can be found at the Los Angeles, Irvine, Santa Cruz and Riverside campuses. Snodgrass spent many years researching and measuring the ocean tides and waves. During his career he had opportunities to work with fellow scientists around the world, including collaborations through the IGPP campuses, with Woods Hole Oceanographic Institution in Massachusetts and with the National Institute of Oceanography in England.
Lampris guttatus, commonly known as the opah, cravo, moonfish, kingfish, and Jerusalem haddock, is a large, colorful, deep-bodied pelagic lampriform fish belonging to the family Lampridae, which comprises the genus Lampris.
The following outline is provided as an overview of and topical guide to brain mapping:
An MRI sequence in magnetic resonance imaging (MRI) is a particular setting of pulse sequences and pulsed field gradients, resulting in a particular image appearance.