| Season | 2006 |
|---|---|
| Dates | 15 Aprii-12 November |
| Champions | FBK Kaunas |
| Relegated | FK Silute FK Nevezis |
| UEFA Champions League | FBK Kaunas |
| UEFA Cup | FK Ekranas FK Suduva |
| UEFA Intertoto Cup | FK Vetra |
| Top goalscorer |  Serhiy Kuznetsov (18 goals) |
← 2005 2007 → | |
The Lithuanian A Lyga 2006 was the 17th season of top-tier football in Lithuania. The season started on 15 April 2006 and ended on 12 November 2006. [1] 10 teams participated with FBK Kaunas winning the championship.
| Pos | Team | Pld | W | D | L | GF | GA | GD | Pts | Qualification or relegation |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | FBK Kaunas (C) | 36 | 28 | 4 | 4 | 85 | 30 | +55 | 88 | Qualification to Champions League first qualifying round |
| 2 | Ekranas | 36 | 20 | 7 | 9 | 63 | 39 | +24 | 67 | Qualification to UEFA Cup first qualifying round |
| 3 | Vėtra | 36 | 17 | 10 | 9 | 49 | 35 | +14 | 61 | Qualification to Intertoto Cup first round |
| 4 | Žalgiris | 36 | 14 | 12 | 10 | 52 | 39 | +13 | 54 | |
| 5 | Sūduva | 36 | 15 | 8 | 13 | 48 | 44 | +4 | 53 | Qualification to UEFA Cup first qualifying round |
| 6 | Atlantas | 36 | 14 | 10 | 12 | 46 | 41 | +5 | 52 | |
| 7 | Vilnius | 36 | 11 | 14 | 11 | 46 | 40 | +6 | 47 | |
| 8 | Šiauliai | 36 | 10 | 11 | 15 | 42 | 46 | −4 | 41 | |
| 9 | Šilutė (R) | 36 | 5 | 3 | 28 | 25 | 77 | −52 | 18 | Qualification to Relegation play-offs |
| 10 | Nevėžis (R) | 36 | 4 | 5 | 27 | 35 | 100 | −65 | 17 | Relegation to 1 Lyga |
First half of season | Second half of season |
| Team 1 | Agg. | Team 2 | 1st leg | 2nd leg |
|---|---|---|---|---|
| Interas-AE | 2–2 (4–3 p) | Šilutė | 1–0 | 1–2 |
| Pos. | Player | Club | Goals |
|---|---|---|---|
| 1 | Serhiy Kuznetsov | Vėtra | 18 |
| 2 |  Mantas Savėnas | Ekranas | 16 |
| Ilya Halyuza | Šiauliai | ||
| 4 | Andrius Velička | FBK Kaunas | 14 |
| Ričardas Beniušis | FBK Kaunas | ||
| 6 | Povilas Lukšys | Ekranas | 13 |
| Maksim Morozov | Atlantas | ||
| Vitalis Stankevičius | Nevėžis | ||
 Edin Pehlić | FBK Kaunas | ||
| 10 | Vitalijus Kavaliauskas | Ekranas | 12 |
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