ANKFY1

ANKFY1
Identifiers
Aliases	ANKFY1 , ANKHZN, BTBD23, ZFYVE14, ankyrin repeat and FYVE domain containing 1
External IDs	OMIM: 607927; MGI: 1337008; HomoloGene: 9491; GeneCards: ANKFY1; OMA:ANKFY1 - orthologs
Gene location (Human) Chr. Chromosome 17 (human) [1] Band 17p13.2 Start 4,163,821 bp [1] End 4,263,995 bp [1]
Gene location (Mouse) Chr. Chromosome 11 (mouse) [2] Band 11|11 B4 Start 72,580,832 bp [2] End 72,662,972 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in skin of hip parietal pleura visceral pleura corpus callosum tibia Achilles tendon skin of thigh palpebral conjunctiva external globus pallidus right hemisphere of cerebellum Top expressed in stroma of bone marrow granulocyte epithelium of stomach corneal stroma lactiferous gland calvaria lumbar spinal ganglion mucous cell of stomach wall of urinary bladder mucosa of urinary bladder More reference expression data BioGPS More reference expression data
Gene ontology Molecular function phosphatidylinositol phosphate binding protein binding metal ion binding Cellular component cytoplasm macropinosome retromer complex lysosomal membrane early endosome endosome membrane extracellular exosome membrane cytosol endosome intracellular membrane-bounded organelle Biological process positive regulation of pinocytosis endosomal vesicle fusion retrograde transport, endosome to Golgi endocytosis Golgi to lysosome transport endosomal transport Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 51479 11736 Ensembl ENSG00000185722 ENSMUSG00000020790 UniProt Q9P2R3 Q810B6 RefSeq (mRNA) NM_001257999 NM_016376 NM_020740 NM_001330063 NM_009671 RefSeq (protein) NP_001244928 NP_001316992 NP_057460 NP_033801 Location (UCSC) Chr 17: 4.16 – 4.26 Mb Chr 11: 72.58 – 72.66 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Ankyrin repeat and FYVE domain-containing protein 1 is a protein that in humans is encoded by the ANKFY1 gene. ^{[5] [6] [7]}

Function

This gene encodes a cytoplasmic protein that contains a coiled-coil structure and a BTB/POZ domain at its N-terminus, ankyrin repeats in the middle portion, and a FYVE-finger motif at its C-terminus. This protein belongs to a subgroup of double zinc finger proteins which may be involved in vesicle or protein transport. Alternative splicing has been observed at this locus and two variants, each encoding a distinct isoform, have been identified. ^[7]

References

1. GRCh38: Ensembl release 89: ENSG00000185722 – Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000020790 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Kuriyama H, Asakawa S, Minoshima S, Maruyama H, Ishii N, Ito K, Gejyo F, Arakawa M, Shimizu N, Kuwano R (Aug 2000). "Characterization and chromosomal mapping of a novel human gene, ANKHZN". Gene. 253 (2): 151–60. doi:10.1016/S0378-1119(00)00247-X. PMID   10940552.
6. Bouslam N, Bouhouche A, Benomar A, Hanein S, Klebe S, Azzedine H, Di Giandomenico S, Boland-Augé A, Santorelli FM, Durr A, Brice A, Yahyaoui M, Stevanin G (May 2007). "A novel locus for autosomal recessive spastic ataxia on chromosome 17p". Human Genetics. 121 (3–4): 413–20. doi:10.1007/s00439-007-0328-0. PMID   17273843. S2CID   11187568.
7. "Entrez Gene: ANKFY1 ankyrin repeat and FYVE domain containing 1".

External links

• Human ANKFY1 genome location and ANKFY1 gene details page in the UCSC Genome Browser .

Further reading

• Nakajima D, Okazaki N, Yamakawa H, Kikuno R, Ohara O, Nagase T (Jun 2002). "Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones". DNA Research. 9 (3): 99–106. CiteSeerX   10.1.1.500.923 . doi:10.1093/dnares/9.3.99. PMID   12168954.
• Maruyama K, Sugano S (Jan 1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID   8125298.
• Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, Suyama A, Sugano S (Oct 1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID   9373149.
• Ito K, Ishii N, Miyashita A, Tominaga K, Kuriyama H, Maruyama H, Shirai M, Naito M, Arakawa M, Kuwano R (Apr 1999). "Molecular cloning of a novel 130-kDa cytoplasmic protein, Ankhzn, containing Ankyrin repeats hooked to a zinc finger motif". Biochemical and Biophysical Research Communications. 257 (1): 206–13. doi:10.1006/bbrc.1999.0430. PMID   10092534.
• Nagase T, Ishikawa K, Kikuno R, Hirosawa M, Nomura N, Ohara O (Oct 1999). "Prediction of the coding sequences of unidentified human genes. XV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro". DNA Research. 6 (5): 337–45. doi: 10.1093/dnares/6.5.337 . PMID   10574462.
• Schnatwinkel C, Christoforidis S, Lindsay MR, Uttenweiler-Joseph S, Wilm M, Parton RG, Zerial M (Sep 2004). "The Rab5 effector Rabankyrin-5 regulates and coordinates different endocytic mechanisms". PLOS Biology. 2 (9): E261. doi: 10.1371/journal.pbio.0020261 . PMC   514490 . PMID   15328530.
• Kimura K, Wakamatsu A, Suzuki Y, Ota T, Nishikawa T, Yamashita R, Yamamoto J, Sekine M, Tsuritani K, Wakaguri H, Ishii S, Sugiyama T, Saito K, Isono Y, Irie R, Kushida N, Yoneyama T, Otsuka R, Kanda K, Yokoi T, Kondo H, Wagatsuma M, Murakawa K, Ishida S, Ishibashi T, Takahashi-Fujii A, Tanase T, Nagai K, Kikuchi H, Nakai K, Isogai T, Sugano S (Jan 2006). "Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes". Genome Research. 16 (1): 55–65. doi:10.1101/gr.4039406. PMC   1356129 . PMID   16344560.