AP5B1

Last updated
AP5B1
Identifiers
Aliases AP5B1 , AP-5, PP1030, adaptor related protein complex 5 beta 1 subunit, adaptor related protein complex 5 subunit beta 1
External IDs OMIM: 614367 MGI: 2685808 HomoloGene: 16299 GeneCards: AP5B1
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_138368

NM_001033448
NM_001362046

RefSeq (protein)

NP_612377

NP_001028620
NP_001348975

Location (UCSC) Chr 11: 65.77 – 65.78 Mb Chr 19: 5.62 – 5.62 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

AP-5 complex subunit beta (AP5B1) is a protein that in humans is encoded by the AP5B1 gene. [5]

Function

The protein encoded by this gene is one of two large subunits of the AP5 adaptor complex. [6] Variants in this gene have not been implicated in any disease but damaging variants in AP5Z1, the gene encoding the other large subunit in this complex, are associated with SPG48, a type of hereditary spastic paraplegia. [7] [8] In addition, damaging variants in the genes encoding two proteins that stably associate with the AP-5 adaptor complex are also associated with forms of hereditary spastic paraplegia - SPG11 with the disease of the same name [9] and ZFYVE26 with SPG15. [10]

GnomAD reports an observed v. expected ratio of predicted loss-of-function variants of 0.84 (0.58 - 1.24) for AP5B1. [11] [12]

Related Research Articles

<span class="mw-page-title-main">Vesicular transport adaptor protein</span>

Vesicular transport adaptor proteins are proteins involved in forming complexes that function in the trafficking of molecules from one subcellular location to another. These complexes concentrate the correct cargo molecules in vesicles that bud or extrude off of one organelle and travel to another location, where the cargo is delivered. While some of the details of how these adaptor proteins achieve their trafficking specificity has been worked out, there is still much to be learned.

<span class="mw-page-title-main">Spastin</span> Protein

The human gene SPAST codes for the microtubule-severing protein of the same name, commonly known as spastin.

<span class="mw-page-title-main">Paraplegin</span> Protein-coding gene in the species Homo sapiens

Paraplegin is a protein that in humans is encoded by the SPG7 gene located on chromosome 16.

<span class="mw-page-title-main">SPG20</span> Protein-coding gene in the species Homo sapiens

Spartin is a protein that in humans is encoded by the SPG20 gene.

<span class="mw-page-title-main">KIF5A</span> Protein-coding gene in humans

Kinesin family member 5A is a protein that in humans is encoded by the KIF5A gene.

<span class="mw-page-title-main">NIPA1</span> Protein-coding gene in the species Homo sapiens

Non-imprinted in Prader-Willi/Angelman syndrome region protein 1 is a protein that in humans is encoded by the NIPA1 gene. This gene encodes a potential transmembrane protein which functions either as a receptor or transporter molecule, possibly as a magnesium transporter. This protein is thought to play a role in nervous system development and maintenance. Alternative splice variants have been described, but their biological nature has not been determined. Mutations in this gene have been associated with the human genetic disease autosomal dominant spastic paraplegia 6.

<span class="mw-page-title-main">AP4B1</span> Protein-coding gene in the species Homo sapiens

AP-4 complex subunit beta-1 is a protein that in humans is encoded by the AP4B1 gene.

<span class="mw-page-title-main">AP4M1</span> Protein-coding gene in the species Homo sapiens

AP-4 complex subunit mu-1 is a protein that in humans is encoded by the AP4M1 gene.

<span class="mw-page-title-main">KIAA0196</span> Protein-coding gene in the species Homo sapiens

KIAA0196 is a human gene. The product is a protein that is a component of the WASH complex, which regulates actin assembly on intracellular vesicles. Mutations in KIAA0196 are implicated in some forms of hereditary spastic paraplegia.

<span class="mw-page-title-main">SPG11</span>

Spatacsin is a protein that in humans is encoded by the SPG11 gene.

<span class="mw-page-title-main">AP4E1</span> Protein-coding gene in the species Homo sapiens

AP-4 complex subunit epsilon-1 is a protein that in humans is encoded by the AP4E1 gene.

<span class="mw-page-title-main">AP4S1</span> Protein-coding gene in humans

AP-4 complex subunit sigma-1 is a protein that in humans is encoded by the AP4S1 gene.

<span class="mw-page-title-main">Acetyl-coenzyme A transporter 1</span> Protein-coding gene in the species Homo sapiens

Acetyl-coenzyme A transporter 1 also known as solute carrier family 33 member 1 (SLC33A1) is a protein that in humans is encoded by the SLC33A1 gene.

Margaret Scott Robinson FRS FMedSci is a British molecular cell biologist, a professor and researcher in the Cambridge Institute for Medical Research, at the University of Cambridge.

<span class="mw-page-title-main">ZFYVE26</span> Protein-coding gene in the species Homo sapiens

Zinc finger, FYVE domain containing 26 is a protein that in humans is encoded by the ZFYVE26 gene.

<span class="mw-page-title-main">ZFYVE27</span> Protein-coding gene in the species Homo sapiens

Zinc finger, FYVE domain containing 27 is a protein that in humans is encoded by the ZFYVE27 gene.

Spastic paraplegia 15 (SPG15) is a form of hereditary spastic paraplegia that commonly becomes apparent during childhood or adolescence. The disease is caused by mutations within the ZFYVE26 gene - also known as the SPG15 gene - and is passed down in an autosomal recessive manner.

<span class="mw-page-title-main">AP5Z1</span> Protein-coding gene in the species Homo sapiens

AP-5 complex subunit zeta (AP5Z1) is a protein that in humans is encoded by the AP5Z1 gene.

<span class="mw-page-title-main">AP5M1</span> Protein-coding gene in the species Homo sapiens

AP-5 complex subunit mu (AP5M1), otherwise known as MUDENG (MuD), is a protein that is encoded by the AP5M1 gene. The AP5M1 gene was originally discovered when screening for genes which helped to promote death in Fas-mediated apoptosis. It is a highly conserved gene.

<span class="mw-page-title-main">AP5S1</span> Protein-coding gene in the species Homo sapiens

AP-5 complex subunit sigma (AP5S1) is a protein that in humans is encoded by the AP5S1 gene.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000254470 - Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000049562 - Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Hirst, Jennifer; Barlow, Lael D.; Francisco, Gabriel Casey; Sahlender, Daniela A.; Seaman, Matthew N. J.; Dacks, Joel B.; Robinson, Margaret S. (2011-10-11). "The fifth adaptor protein complex". PLOS Biology. 9 (10): e1001170. doi:10.1371/journal.pbio.1001170. ISSN   1545-7885. PMC   3191125 . PMID   22022230.
  6. Hirst, Jennifer; Irving, Carol; Borner, Georg H. H. (2012-11-21). "Adaptor protein complexes AP-4 and AP-5: new players in endosomal trafficking and progressive spastic paraplegia". Traffic. 14 (2): 153–164. doi: 10.1111/tra.12028 . ISSN   1600-0854. PMID   23167973. S2CID   13766991. Archived from the original on 2022-02-10. Retrieved 2022-07-09.
  7. Słabicki, Mikołaj; Theis, Mirko; Krastev, Dragomir B.; Samsonov, Sergey; Mundwiller, Emeline; Junqueira, Magno; Paszkowski-Rogacz, Maciej; Teyra, Joan; Heninger, Anne-Kristin; Poser, Ina; Prieur, Fabienne (2010-06-29). "A genome-scale DNA repair RNAi screen identifies SPG48 as a novel gene associated with hereditary spastic paraplegia". PLOS Biology. 8 (6): e1000408. doi:10.1371/journal.pbio.1000408. ISSN   1545-7885. PMC   2893954 . PMID   20613862.
  8. Hirst, Jennifer; Madeo, Marianna; Smets, Katrien; Edgar, James R.; Schols, Ludger; Li, Jun; Yarrow, Anna; Deconinck, Tine; Baets, Jonathan; Van Aken, Elisabeth; De Bleecker, Jan (2016-08-25). "Complicated spastic paraplegia in patients with AP5Z1 mutations (SPG48)". Neurology. Genetics. 2 (5): e98. doi:10.1212/NXG.0000000000000098. ISSN   2376-7839. PMC   5001803 . PMID   27606357.
  9. Stevanin, Giovanni (1993), Adam, Margaret P.; Mirzaa, Ghayda M.; Pagon, Roberta A.; Wallace, Stephanie E. (eds.), "Spastic Paraplegia 11", GeneReviews®, Seattle (WA): University of Washington, Seattle, PMID   20301389, archived from the original on 2022-01-22, retrieved 2022-07-09
  10. Hanein, Sylvain; Martin, Elodie; Boukhris, Amir; Byrne, Paula; Goizet, Cyril; Hamri, Abdelmadjid; Benomar, Ali; Lossos, Alexander; Denora, Paola; Fernandez, José; Elleuch, Nizar (April 2008). "Identification of the SPG15 gene, encoding spastizin, as a frequent cause of complicated autosomal-recessive spastic paraplegia, including Kjellin syndrome". American Journal of Human Genetics. 82 (4): 992–1002. doi:10.1016/j.ajhg.2008.03.004. ISSN   1537-6605. PMC   2427184 . PMID   18394578.
  11. "GnomAD".
  12. "Loss-of-Function Curations in gnomAD | gnomAD browser".