ARF4

ARF4
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 1Z6X
Identifiers
Aliases	ARF4 , ARF2, ADP ribosylation factor 4
External IDs	OMIM: 601177 MGI: 99433 HomoloGene: 55593 GeneCards: ARF4
Gene location (Human) Chr. Chromosome 3 (human) [1] Band 3p14.3 Start 57,571,363 bp [1] End 57,598,220 bp [1]
RNA expression pattern More reference expression data
Gene ontology Molecular function • nucleotide binding • epidermal growth factor receptor binding • GTP binding • GO:0001948 protein binding • GO:0006184 GTPase activity Cellular component • cytosol • Golgi apparatus • membrane • dendritic spine • intracellular anatomical structure • ruffle membrane • extracellular exosome • GO:0005578 extracellular matrix • cytoplasm • cell membrane • glutamatergic synapse Biological process • protein ADP-ribosylation • small GTPase mediated signal transduction • negative regulation of apoptotic process • regulation of reactive oxygen species metabolic process • endoplasmic reticulum to Golgi vesicle-mediated transport • activation of phospholipase D activity • protein transport • cell migration • vesicle-mediated transport • positive regulation of transcription by RNA polymerase II • retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum • transport • dendritic spine development • intracellular protein transport • Golgi to plasma membrane transport • epidermal growth factor receptor signaling pathway • brain development • learning • apical protein localization • establishment or maintenance of epithelial cell apical/basal polarity • response to axon injury • regulation of synapse organization • protein localization to cilium • regulation of postsynapse organization Sources:Amigo / QuickGO
Orthologs
Species	Human	Mouse
Entrez	378	11843
Ensembl	ENSG00000168374	ENSMUSG00000021877
UniProt	P18085	P61750
RefSeq (mRNA)	NM_001660	NM_007479
RefSeq (protein)	NP_001651	NP_031505
Location (UCSC)	Chr 3: 57.57 – 57.6 Mb	n/a
PubMed search	[2]	[3]
Wikidata
View/Edit Human View/Edit Mouse

ADP-ribosylation factor 4 is a protein that in humans is encoded by the ARF4 gene. ^{[4] [5]}

Function

ADP-ribosylation factor 4 (ARF4) is a member of the human ARF gene family. These genes encode small guanine nucleotide-binding proteins that stimulate the ADP-ribosyltransferase activity of cholera toxin and play a role in vesicular trafficking and as activators of phospholipase D. The gene products include 5 ARF proteins and 11 ARF-like proteins and constitute 1 family of the RAS superfamily. The ARF proteins are categorized as class I (ARF1 and ARF3), class II (ARF4 and ARF5) and class III (ARF6). The members of each class share a common gene organization. The ARF4 gene spans approximately 12kb and contains six exons and five introns. The ARF4 is the most divergent member of the human ARFs. Conflicting Map positions at 3p14 or 3p21 have been reported for this gene. ^[5]

Interactions

ARF4 has been shown to interact with Epidermal growth factor receptor ^[6] and with RVxP motifs. ^[7]

References

1. GRCh38: Ensembl release 89: ENSG00000168374 - Ensembl, May 2017
2. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
3. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. Monaco L, Murtagh JJ, Newman KB, Tsai SC, Moss J, Vaughan M (Apr 1990). "Selective amplification of an mRNA and related pseudogene for a human ADP-ribosylation factor, a guanine nucleotide-dependent protein activator of cholera toxin". Proc. Natl. Acad. Sci. U.S.A. 87 (6): 2206–10. doi: 10.1073/pnas.87.6.2206 . PMC   53655 . PMID   2107548.
5. "Entrez Gene: ARF4 ADP-ribosylation factor 4".
6. Kim SW, Hayashi M, Lo JF, Yang Y, Yoo JS, Lee JD (Jan 2003). "ADP-ribosylation factor 4 small GTPase mediates epidermal growth factor receptor-dependent phospholipase D2 activation". J. Biol. Chem. 278 (4): 2661–8. doi: 10.1074/jbc.M205819200 . PMID   12446727.
7. Ward, Heather H.; Brown-Glaberman, Ursa; Wang, Jing; Morita, Yoshiko; Alper, Seth L.; Bedrick, Edward J.; Gattone, Vincent H.; Deretic, Dusanka; Wandinger-Ness, Angela (20 July 2011). "A conserved signal and GTPase complex are required for the ciliary transport of polycystin-1". Molecular Biology of the Cell. 22 (18): 3289–3305. doi: 10.1091/mbc.e11-01-0082 . ISSN   1059-1524. PMC   3172256 . PMID   21775626.

Further reading

• Lee FJ, Moss J, Vaughan M (1992). "Human and Giardia ADP-ribosylation factors (ARFs) complement ARF function in Saccharomyces cerevisiae". J. Biol. Chem. 267 (34): 24441–5. doi:10.1016/S0021-9258(18)35786-7. PMID   1447192.
• Kahn RA, Kern FG, Clark J, Gelmann EP, Rulka C (1991). "Human ADP-ribosylation factors. A functionally conserved family of GTP-binding proteins". J. Biol. Chem. 266 (4): 2606–14. doi:10.1016/S0021-9258(18)52288-2. PMID   1899243.
• Stearns T, Willingham MC, Botstein D, Kahn RA (1990). "ADP-ribosylation factor is functionally and physically associated with the Golgi complex". Proc. Natl. Acad. Sci. U.S.A. 87 (3): 1238–42. doi: 10.1073/pnas.87.3.1238 . PMC   53446 . PMID   2105501.
• Vorobieva N, Protopopov A, Protopopova M, Kashuba V, Allikmets RL, Modi W, Zabarovsky ER, Klein G, Kisselev L, Graphodatsky A (1995). "Localization of human ARF2 and NCK genes and 13 other NotI-linking clones to chromosome 3 by fluorescence in situ hybridization". Cytogenet. Cell Genet. 68 (1–2): 91–4. doi:10.1159/000133898. PMID   7956370.
• Orcl L, Palmer DJ, Amherdt M, Rothman JE (1993). "Coated vesicle assembly in the Golgi requires only coatomer and ARF proteins from the cytosol". Nature. 364 (6439): 732–4. doi:10.1038/364732a0. PMID   8355790. S2CID   4348442.
• Helms JB, Palmer DJ, Rothman JE (1993). "Two distinct populations of ARF bound to Golgi membranes". J. Cell Biol. 121 (4): 751–60. doi:10.1083/jcb.121.4.751. PMC   2119793 . PMID   8491770.
• Pardinas J, Pang Z, Houghton J, Palejwala V, Donnelly RJ, Hubbard K, Small MB, Ozer HL (1997). "Differential gene expression in SV40-mediated immortalization of human fibroblasts". J. Cell. Physiol. 171 (3): 325–35. doi:10.1002/(SICI)1097-4652(199706)171:3<325::AID-JCP11>3.0.CO;2-9. PMID   9180902.
• Kim HS (1998). "Human ADP-ribosylation factor 4 (ARF4) gene. Map position 3p14.1". Chromosome Res. 6 (8): 663. doi:10.1023/A:1009230216005. PMID   10099884. S2CID   31829743.
• Lebeda RA, Haun RS (1999). "Cloning and characterization of the human ADP-ribosylation factor 4 gene". Gene. 237 (1): 209–14. doi:10.1016/S0378-1119(99)00290-5. PMID   10524252.
• Shin OH, Ross AH, Mihai I, Exton JH (1999). "Identification of arfophilin, a target protein for GTP-bound class II ADP-ribosylation factors". J. Biol. Chem. 274 (51): 36609–15. doi: 10.1074/jbc.274.51.36609 . PMID   10593962.
• Nevrivy DJ, Peterson VJ, Avram D, Ishmael JE, Hansen SG, Dowell P, Hruby DE, Dawson MI, Leid M (2000). "Interaction of GRASP, a protein encoded by a novel retinoic acid-induced gene, with members of the cytohesin family of guanine nucleotide exchange factors". J. Biol. Chem. 275 (22): 16827–36. doi: 10.1074/jbc.275.22.16827 . PMID   10828067.
• Prekeris R, Davies JM, Scheller RH (2001). "Identification of a novel Rab11/25 binding domain present in Eferin and Rip proteins". J. Biol. Chem. 276 (42): 38966–70. doi: 10.1074/jbc.M106133200 . PMID   11481332.
• Kim SW, Hayashi M, Lo JF, Yang Y, Yoo JS, Lee JD (2003). "ADP-ribosylation factor 4 small GTPase mediates epidermal growth factor receptor-dependent phospholipase D2 activation". J. Biol. Chem. 278 (4): 2661–8. doi: 10.1074/jbc.M205819200 . PMID   12446727.
• Katayama T, Imaizumi K, Yoneda T, Taniguchi M, Honda A, Manabe T, Hitomi J, Oono K, Baba K, Miyata S, Matsuzaki S, Takatsuji K, Tohyama M (2004). "Role of ARF4L in recycling between endosomes and the plasma membrane". Cell. Mol. Neurobiol. 24 (1): 137–47. doi:10.1023/B:CEMN.0000012719.12015.ec. PMID   15049518. S2CID   6273028.

External links

• Human ARF4 genome location and ARF4 gene details page in the UCSC Genome Browser .