ARID5B

Last updated
ARID5B
Protein ARID5B PDB 1ig6.png
Available structures
PDB Ortholog search: PDBe RCSB
Identifiers
Aliases ARID5B , DESRT, MRF-2, MRF2, AT-rich interaction domain 5B
External IDs OMIM: 608538; MGI: 2175912; HomoloGene: 45872; GeneCards: ARID5B; OMA:ARID5B - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_001244638
NM_032199

NM_023598

RefSeq (protein)

NP_001231567
NP_115575

NP_076087

Location (UCSC) Chr 10: 61.9 – 62.1 Mb Chr 10: 67.93 – 68.11 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

AT-rich interactive domain-containing protein 5B is a protein that in humans is encoded by the ARID5B gene. [5] [6] [7]

Contents

Alternative names for this gene include Modulator recognition factor 23.

Genomics

The gene is located on the long arm of chromosome 10 (10q21.2) on the 'plus' strand. It spans 195,261 base pairs in length. It encodes a protein of predicted length and molecular weight of 1188 amino acids and 132.375 kilodaltons respectively.

Clinical importance

Through genome wide association studies (GWAS), some of the single nucleotide polymorphisms (SNPs) located in this gene has been noticed to be significantly associated with susceptibility [8] [9] [10] as well as treatment outcomes [11] of childhood acute lymphoblastic leukaemia in ethnically diverse populations.

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References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000150347 Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000019947 Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Lahoud MH, Ristevski S, Venter DJ, Jermiin LS, Bertoncello I, Zavarsek S, Hasthorpe S, Drago J, de Kretser D, Hertzog PJ, Kola I (Aug 2001). "Gene targeting of Desrt, a novel ARID class DNA-binding protein, causes growth retardation and abnormal development of reproductive organs". Genome Research. 11 (8): 1327–34. doi: 10.1101/gr.168801 . hdl: 10536/DRO/DU:30121320 . PMID   11483573.
  6. Zhu L, Hu J, Lin D, Whitson R, Itakura K, Chen Y (Aug 2001). "Dynamics of the Mrf-2 DNA-binding domain free and in complex with DNA". Biochemistry. 40 (31): 9142–50. doi:10.1021/bi010476a. PMID   11478881.
  7. "Entrez Gene: ARID5B AT rich interactive domain 5B (MRF1-like)".
  8. Xu H, Yang W, Perez-Andreu V, Devidas M, Fan Y, Cheng C, et al. (May 2013). "Novel susceptibility variants at 10p12.31-12.2 for childhood acute lymphoblastic leukemia in ethnically diverse populations". Journal of the National Cancer Institute. 105 (10): 733–42. doi:10.1093/jnci/djt042. PMC   3691938 . PMID   23512250.
  9. Treviño LR, Yang W, French D, Hunger SP, Carroll WL, Devidas M, et al. (September 2009). "Germline genomic variants associated with childhood acute lymphoblastic leukemia". Nature Genetics. 41 (9): 1001–5. doi:10.1038/ng.432. PMC   2762391 . PMID   19684603.
  10. Papaemmanuil E, Hosking FJ, Vijayakrishnan J, Price A, Olver B, Sheridan E, et al. (September 2009). "Loci on 7p12.2, 10q21.2 and 14q11.2 are associated with risk of childhood acute lymphoblastic leukemia". Nature Genetics. 41 (9): 1006–10. doi:10.1038/ng.430. PMC   4915548 . PMID   19684604.
  11. Xu H, Cheng C, Devidas M, Pei D, Fan Y, Yang W, et al. (March 2012). "ARID5B genetic polymorphisms contribute to racial disparities in the incidence and treatment outcome of childhood acute lymphoblastic leukemia". Journal of Clinical Oncology. 30 (7): 751–7. doi:10.1200/JCO.2011.38.0345. PMC   3295551 . PMID   22291082.

Further reading