Clostridium botulinum is a Gram-positive, rod-shaped, anaerobic, spore-forming, motile bacterium with the ability to produce the neurotoxin botulinum.
Ruminants are hoofed herbivorous grazing or browsing mammals that are able to acquire nutrients from plant-based food by fermenting it in a specialized stomach prior to digestion, principally through microbial actions. The process, which takes place in the front part of the digestive system and therefore is called foregut fermentation, typically requires the fermented ingesta to be regurgitated and chewed again. The process of rechewing the cud to further break down plant matter and stimulate digestion is called rumination. The word "ruminant" comes from the Latin ruminare, which means "to chew over again".
The Pasteurellaceae comprise a large family of Gram-negative bacteria. Most members live as commensals on mucosal surfaces of birds and mammals, especially in the upper respiratory tract. Pasteurellaceae are typically rod-shaped, and are a notable group of facultative anaerobes. Their biochemical characteristics can be distinguished from the related Enterobacteriaceae by the presence of oxidase, and from most other similar bacteria by the absence of flagella.
The rumen, also known as a paunch, is the largest stomach compartment in ruminants and the larger part of the reticulorumen, which is the first chamber in the alimentary canal of ruminant animals. The rumen's microbial favoring environment allows it to serve as the primary site for microbial fermentation of ingested feed. The smaller part of the reticulorumen is the reticulum, which is fully continuous with the rumen, but differs from it with regard to the texture of its lining.
Denitrobacterium is a genus of Actinomycetota with a single species, in the family Coriobacteriaceae. Originally isolated from the bovine rumen, Denitrobacterium are non-motile and non-spore forming. The only described species in this genus is Denitrobacterium detoxificans. The specific niche of this bacterium in the bovine rumen is theorized to be the detoxification/metabolism of nitrotoxins and miserotoxin.
Aggregatibacter actinomycetemcomitans is a Gram-negative, facultative anaerobe, nonmotile bacterium that is often found in association with localized aggressive periodontitis, a severe infection of the periodontium. It is also suspected to be involved in chronic periodontitis. Less frequently, A. actinomycetemcomitans is associated with nonoral infections such as endocarditis. Its role in aggressive periodontitis was first discovered by Danish-born periodontist Jørgen Slots, a professor of dentistry and microbiology at the University of Southern California School of Dentistry.
Fibrobacter succinogenes is a cellulolytic bacterium species in the genus Fibrobacter. It is present in the rumen of cattle. Beta glucans are its substrate of choice in the rumen and its products after digestion include formate, acetate and succinate. Fibrobacter succinogenes forms characteristic extensive grooves in crystalline cellulose, and is also rather readily detached from its substrate during sample preparation.
The Ustilaginaceae are a family of smut fungi in the order Ustilaginomycetes. Collectively, the family contains 17 genera and 607 species.
Acetitomaculum is a genus in the phylum Bacillota (Bacteria). The single species is an acetogenic bacteria from the bovine rumen.
Latilactobacillus sakei is the type species of the genus Latilactobacillus that was previously classified in the genus Lactobacillus. It is homofermentative; hexoses are metabolized via Glycolysis to lactic acid as main metabolite; pentoses are fermented via the Phosphoketolase pathway to lactic and acetic acids.
Microbial production of Succinic acid can be performed with wild bacteria like Actinobacillus succinogenes, Mannheimia succiniciproducens and Anaerobiospirillum succiniciproducens or genetically modified Escherichia coli, Corynebacterium glutamicum and Saccharomyces cerevisiae. Understanding of the central carbon metabolism of these organisms is crucial in determining the maximum obtainable yield of succinic acid on the carbon source employed as substrate.
Pasteurella lymphangitidis is a bacterium; it causes bovine lymphangitis. Its reclassification to Yersinia has been proposed, given it poses a 99% sequence similarity to both Yersinia pseudotuberculosis and Yersinia pestis.
Pasteurella mairii is a Gram-negative bacterium. It causes abortion in sows.
Methanosarcina barkeri is the most fundamental species of the genus Methanosarcina, and their properties apply generally to the genus Methanosarcina. Methanosarcina barkeri can produce methane anaerobically through different metabolic pathways. M. barkeri can subsume a variety of molecules for ATP production, including methanol, acetate, methylamines, and different forms of hydrogen and carbon dioxide. Although it is a slow developer and is sensitive to change in environmental conditions, M. barkeri is able to grow in a variety of different substrates, adding to its appeal for genetic analysis. Additionally, M. barkeri is the first organism in which the amino acid pyrrolysine was found. Furthermore, two strains of M. barkeri, M. b. Fusaro and M. b. MS have been identified to possess an F-type ATPase along with an A-type ATPase.
Bifidobacterium ruminantium is a bacterium found in bovine rumens.
Butyrivibrio hungatei is a species of Gram-negative, anaerobic, non-spore-forming, butyrate-producing bacteria. It is curved rod-shaped and motile by means of single polar or subpolar flagellum and is common in the rumen. Its type strain is JK 615T.
The genus Wolinella is a member of the Campylobacterales order of Bacteria. The order Campylobacterales includes human pathogens such as Helicobacter pylori and Campylobacter jejuni.
Interspecies hydrogen transfer (IHT) is a form of interspecies electron transfer. It is a syntrophic process by which H2 is transferred from one organism to another, particularly in the rumen and other anaerobic environments.
Methanogens are a group of microorganisms that can produce methane as a byproduct of their metabolism. They hold an important place in the digestive system of ruminants. The digestive tract of ruminants contain four major parts, they are abomasum, rumen, omasum and reticulum. The food with saliva is first passed to the rumen for breaking them into smaller particles and then it moves to the reticulum where the food is broken into further smaller particles and the indigestible particles are sent back for rechewing and then to rumen. The majority of the anaerobic microbes assisting the cellulose breakdown occupy the rumen. They initiate the fermentation process. The animal absorbs the fatty acids, vitamins and nutrient content on passing the partially digested food from rumen to omasum which, decreases the pH level and thus initiates the release of enzymes for further break down the food which is later passed to the abomasum that absorbs remaining nutrients before excretion. This process takes about 9–12 hours.
Basfia succiniciproducens is a gram-negative, facultatively anaerobic, and immobile bacterium from the Pasteurellaceae family. It was first isolated from bovine rumen in 2008. Its ability to produce relatively large quantities of succinic acid through fermentation in biomass hydrolysates is potentially important for industrial biotechnology.
