Bat1K

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Bat1K is a project to sequence the genomes of all living bat species to the level of chromosomes and then make the data publicly available. The project began in 2017. [1]

Contents

History

Bat1K was founded in 2017. Zoologist and geneticist Emma Teeling and neurogeneticist Sonja Vernes are co-founders. [1] The Bat1K consortium includes researchers from institutions such as University College Dublin, University of Bristol, Max Planck Institute of Molecular Cell Biology and Genetics, and Max Planck Institute for Psycholinguistics. Notable members include Eugene Myers, Liliana M. Dávalos, Nancy Simmons, and Erich Jarvis. [2] [3] As of November 2017, there were 148 members in total, consisting of bat biologists, genome technologists, conservationists, and computational scientists. [4]

Applications

Several research areas could be furthered by documenting bat genomes. These include healthy ageing, disease resistance, ecosystem function and ecosystem services, sensory perception, communication, limb development, and mammal genome structure. [4]

Results

In 2020, the genomes of six species were published: the greater horseshoe bat, Egyptian fruit bat, pale spear-nosed bat, greater mouse-eared bat, Kuhl's pipistrelle, and the velvety free-tailed bat. These genomes were called "comparable to the best reference-quality genomes that have so far been generated for any eukaryote with a gigabase-sized genome". [5] In 2020, the project's stated goal was to sequence an additional 27 genomes, with a representative from each family of bats, within the next year. [1]

See also

Related Research Articles

<span class="mw-page-title-main">Genome</span> All genetic material of an organism

In the fields of molecular biology and genetics, a genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA. The nuclear genome includes protein-coding genes and non-coding genes, other functional regions of the genome such as regulatory sequences, and often a substantial fraction of junk DNA with no evident function. Almost all eukaryotes have mitochondria and a small mitochondrial genome. Algae and plants also contain chloroplasts with a chloroplast genome.

<span class="mw-page-title-main">Svante Pääbo</span> Swedish geneticist (born 1955)

Svante Pääbo is a Swedish geneticist and Nobel Laureate who specialises in the field of evolutionary genetics. As one of the founders of paleogenetics, he has worked extensively on the Neanderthal genome. In 1997, he became founding director of the Department of Genetics at the Max Planck Institute for Evolutionary Anthropology in Leipzig, Germany. Since 1999, he has been an honorary professor at Leipzig University; he currently teaches molecular evolutionary biology at the university. He is also an adjunct professor at Okinawa Institute of Science and Technology, Japan.

<span class="mw-page-title-main">Megabat</span> Family of fruit bats

Megabats constitute the family Pteropodidae of the order Chiroptera (bats). They are also called fruit bats, Old World fruit bats, or—especially the genera Acerodon and Pteropus—flying foxes. They are the only member of the superfamily Pteropodoidea, which is one of two superfamilies in the suborder Yinpterochiroptera. Internal divisions of Pteropodidae have varied since subfamilies were first proposed in 1917. From three subfamilies in the 1917 classification, six are now recognized, along with various tribes. As of 2018, 197 species of megabat had been described.

<span class="mw-page-title-main">Vespertilionidae</span> Family of microbats

Vespertilionidae is a family of microbats, of the order Chiroptera, flying, insect-eating mammals variously described as the common, vesper, or simple nosed bats. The vespertilionid family is the most diverse and widely distributed of bat families, specialised in many forms to occupy a range of habitats and ecological circumstances, and it is frequently observed or the subject of research. The facial features of the species are often simple, as they mainly rely on vocally emitted echolocation. The tails of the species are enclosed by the lower flight membranes between the legs. Over 300 species are distributed all over the world, on every continent except Antarctica. It owes its name to the genus Vespertilio, which takes its name from a word for bat, vespertilio, derived from the Latin term vesper meaning 'evening'; they are termed "evening bats" and were once referred to as "evening birds".

<span class="mw-page-title-main">FOXP2</span> Transcription factor gene of the forkhead box family

Forkhead box protein P2 (FOXP2) is a protein that, in humans, is encoded by the FOXP2 gene. FOXP2 is a member of the forkhead box family of transcription factors, proteins that regulate gene expression by binding to DNA. It is expressed in the brain, heart, lungs and digestive system.

<span class="mw-page-title-main">Vampire bat</span> Species of bat

Vampire bats, members of the subfamily Desmodontinae, are leaf-nosed bats currently found in Central and South America. Their food source is the blood of other animals, a dietary trait called hematophagy. Three extant bat species feed solely on blood: the common vampire bat, the hairy-legged vampire bat, and the white-winged vampire bat. Two extinct species of the genus Desmodus have been found in North America.

<span class="mw-page-title-main">Euarchontoglires</span> Superorder of mice, humans, their most recent common ancestor, and all its descendants

Euarchontoglires, synonymous with Supraprimates, is a clade and a superorder of mammals, the living members of which belong to one of the five following groups: rodents, lagomorphs, treeshrews, primates, and colugos.

<i>Oryza sativa</i> Species of plant

Oryza sativa, also known as rice, is the plant species most commonly referred to in English as rice. It is the type of farmed rice whose cultivars are most common globally, and was first domesticated in the Yangtze River basin in China 13,500 to 8,200 years ago.

<span class="mw-page-title-main">Conservation genetics</span> Interdisciplinary study of extinction avoidance

Conservation genetics is an interdisciplinary subfield of population genetics that aims to understand the dynamics of genes in a population for the purpose of natural resource management and extinction prevention. Researchers involved in conservation genetics come from a variety of fields including population genetics, natural resources, molecular ecology, biology, evolutionary biology, and systematics. Genetic diversity is one of the three fundamental measures of biodiversity, so it is an important consideration in the wider field of conservation biology.

<span class="mw-page-title-main">Laurasiatheria</span> Clade of mammals

Laurasiatheria is a superorder of placental mammals that groups together true insectivores (eulipotyphlans), bats (chiropterans), carnivorans, pangolins (pholidotes), even-toed ungulates (artiodactyls), odd-toed ungulates (perissodactyls), and all their extinct relatives. From systematics and phylogenetic perspectives, it is subdivided into order Eulipotyphla and clade Scrotifera. It is a sister group to Euarchontoglires with which it forms the magnorder Boreoeutheria. Laurasiatheria was discovered on the basis of the similar gene sequences shared by the mammals belonging to it; no anatomical features have yet been found that unite the group, although a few have been suggested such as a small coracoid process, a simplified hindgut and allantoic vessels that are large to moderate in size. The Laurasiatheria clade is based on DNA sequence analyses and retrotransposon presence/absence data. The superorder originated on the northern supercontinent of Laurasia, after it split from Gondwana when Pangaea broke up. Its last common ancestor is supposed to have lived between ca. 76 to 90 million years ago.

<i>Miniopterus</i> Genus of bats

Miniopterus, known as the bent-winged or long winged bats, is the sole genus of the family Miniopteridae. They are small flying insectivorous mammals, micro-bats of the order Chiroptera, with wings over twice the length of the body. The genus had been placed in its own subfamily among the vespertilionid bats, as Miniopterinae, but is now classified as its own family.

<span class="mw-page-title-main">Yangochiroptera</span> Suborder of bats

Yangochiroptera, or Vespertilioniformes, is a suborder of Chiroptera that includes most of the microbat families, except the Rhinopomatidae, Rhinolophidae, Hipposideridae, and Megadermatidae. These other families, plus the megabats, are seen as part of another suborder, the Yinpterochiroptera. All bats in Yangochiroptera use laryngeal echolocation(LE), which involves the use of high-frequency sounds to detect prey and avoid obstacles.

<span class="mw-page-title-main">Defaunation</span> Loss or extinctions of animals in the forests

Defaunation is the global, local, or functional extinction of animal populations or species from ecological communities. The growth of the human population, combined with advances in harvesting technologies, has led to more intense and efficient exploitation of the environment. This has resulted in the depletion of large vertebrates from ecological communities, creating what has been termed "empty forest". Defaunation differs from extinction; it includes both the disappearance of species and declines in abundance. Defaunation effects were first implied at the Symposium of Plant-Animal Interactions at the University of Campinas, Brazil in 1988 in the context of Neotropical forests. Since then, the term has gained broader usage in conservation biology as a global phenomenon.

<span class="mw-page-title-main">Griffith's long-fingered bat</span> Species of bat

Griffith's long-fingered bat is a bat in the genus Miniopterus which occurs in southern Madagascar. M. griffithsi was previously a part of the largest family of bats, the Vespertilionidae, which consist of five subfamilies. The bat family Miniopteridae is widely distributed, ranging from the majority of sub-Saharan Africa to north Africa and Eurasia, as well as southern and southeastern Asia and Australia. Typical features of these bats include elongated third fingers, long narrow wings giving them a pointed shape when in flight, and a bent shape when folded, adding to the common name of bent-wing bats. M. griffithsi is similar to its sister species Miniopterus gleni, which lives north of the Onilahy River, while M. giffithsi lives south of it. Researchers first discovered that M. griffithsi was separate from M. gleni based on phylogeographic studies of the latter.

<span class="mw-page-title-main">Simon Fisher</span> British geneticist and neuroscientist (born 1970)

Simon E. Fisher is a British geneticist and neuroscientist who has pioneered research into the genetic basis of human speech and language. He is a director of the Max Planck Institute for Psycholinguistics and Professor of language and genetics at the Donders Institute for Brain, Cognition and Behaviour in Nijmegen, The Netherlands.

Genetic studies on Neanderthal ancient DNA became possible in the late 1990s. The Neanderthal genome project, established in 2006, presented the first fully sequenced Neanderthal genome in 2013.

Liliana M. Dávalos is a Colombian-born evolutionary and conservation biologist, who is currently living in the United States. Her career as a researcher and professor have focused on bats as model systems and on tropical deforestation. 

Asifa Akhtar is a Pakistani biologist who has made significant contributions to the field of chromosome regulation. She is Senior Group Leader and Director of the Department of Chromatin Regulation at the Max Planck Institute of Immunobiology and Epigenetics. Akhtar was awarded EMBO membership in 2013. She became the first international and female Vice President of the Max Planck Society's Biology and Medicine Section in July 2020.

<span class="mw-page-title-main">Emma Teeling</span> Irish zoologist and geneticist

Emma Caroline Teeling is an Irish zoologist, geneticist and genomicist, who specialises in the phylogenetics and genomics of bats. Her work includes understanding of the bat genome and study of how insights from other mammals such as bats might contribute to better understanding and management of ageing and a number of conditions, including deafness and blindness, in humans. She is the co-founder of the Bat1K project to map the genomes of all species of bat. She is also concerned with understanding of the places of bats in the environment and how to conserve their ecosystem.

Sonja Catherine Vernes is a neuroscientist who is, as of 2022, the head of the Neurogenetics of Vocal Communication Research Group at the University of St Andrews. She holds a UK Research and Innovation (UKRI) future leaders fellowship. Her research investigates vocal communication between mammals. She was a laureate for the 2022 Blavatnik Awards for Young Scientists.

References

  1. 1 2 3 Pennisi, Elizabeth (22 July 2020). "How bats have outsmarted viruses—including coronaviruses—for 65 million years". Science. Retrieved 4 August 2020.
  2. "The genetic basis of bats' superpowers revealed". University of Bristol. 29 July 2020. Retrieved 4 August 2020.
  3. "Genomic Basis of Bat Superpowers Could Provide New Insights into Coronavirus Resistance". Genetic Engineering & Biotechnology News. 23 July 2020. Retrieved 4 August 2020.
  4. 1 2 Teeling, Emma C.; Vernes, Sonja C.; Dávalos, Liliana M.; Ray, David A.; Gilbert, M. Thomas P.; Myers, Eugene (2018). "Bat Biology, Genomes, and the Bat1K Project: To Generate Chromosome-Level Genomes for All Living Bat Species". Annual Review of Animal Biosciences. 6: 23–46. doi: 10.1146/annurev-animal-022516-022811 . hdl: 11858/00-001M-0000-002E-5F30-4 . PMID   29166127.
  5. Jebb, David; Huang, Zixia; Pippel, Martin; Hughes, Graham M.; Lavrichenko, Ksenia; Devanna, Paolo; Winkler, Sylke; Jermiin, Lars S.; Skirmuntt, Emilia C.; Katzourakis, Aris; et al. (2020). "Six reference-quality genomes reveal evolution of bat adaptations". Nature. 583 (7817): 578–584. doi: 10.1038/s41586-020-2486-3 . hdl: 21.11116/0000-0006-C116-7 . PMID   32699395. S2CID   220716856.