CLEC3B

CLEC3B
Available structures
PDB	Ortholog search: PDBe RCSB
List of PDB id codes
	1HTN, 1RJH, 1TN3, 3L9J
Identifiers
Aliases	CLEC3B , TN, TNA, C-type lectin domain family 3 member B
External IDs	OMIM: 187520 MGI: 104540 HomoloGene: 31145 GeneCards: CLEC3B
Gene location (Human)
Chr.	Chromosome 3 (human)
End	45,036,071 bp
Gene location (Mouse)
Chr.	Chromosome 9 (mouse)
End	122,986,497 bp
RNA expression pattern
	Top expressed in
	subcutaneous adipose tissue; ; tibial nerve; ; right lung; ; placenta; ; spleen; ; right coronary artery; ; upper lobe of left lung; ; left ventricle; ; Achilles tendon; ; skin of abdomen;
	Top expressed in
	lip; ; ankle; ; esophagus; ; ankle joint; ; right lung; ; right lung lobe; ; intercostal muscle; ; left lung lobe; ; dermis; ; skeletal muscle tissue;
	More reference expression data
	n/a
Gene ontology
Molecular function	calcium ion binding ; heparin binding ; kringle domain binding ; carbohydrate binding ;
Cellular component	cytoplasm ; extracellular matrix ; extracellular exosome ; granular component ; platelet dense granule lumen ; extracellular space ; extracellular region ; collagen-containing extracellular matrix ;
Biological process	cellular response to organic substance ; bone mineralization ; cellular response to transforming growth factor beta stimulus ; positive regulation of plasminogen activation ; ossification ; platelet degranulation ;
	Sources:Amigo / QuickGO
Orthologs
	7123
	21922
	ENSG00000163815
	ENSMUSG00000025784
	P05452
	P43025 ; Q8CFZ6
	NM_001308394 ; NM_003278
	NM_011606
	NP_001295323 ; NP_003269
	NP_035736
	Wikidata
View/Edit Human	View/Edit Mouse

Last updated December 25, 2023

Tetranectin is a protein that in humans is encoded by the CLEC3B gene.^[5]

Related Research Articles

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Lipopolysaccharide binding protein (LBP) is a protein that in humans is encoded by the LBP gene.

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Oxidized low-density lipoprotein receptor 1 also known as lectin-type oxidized LDL receptor 1 (LOX-1) is a protein that in humans is encoded by the OLR1 gene.

Disintegrin and metalloproteinase domain-containing protein 12 is an enzyme that in humans is encoded by the ADAM12 gene. ADAM12 has two splice variants: ADAM12-L, the long form, has a transmembrane region and ADAM12-S, a shorter variant, is soluble and lacks the transmembrane and cytoplasmic domains.

Carboxypeptidase B2 (CPB2), also known as carboxypeptidase U (CPU), plasma carboxypeptidase B (pCPB) or thrombin-activatable fibrinolysis inhibitor (TAFI), is an enzyme that, in humans, is encoded by the gene CPB2.

Laminin subunit alpha-1 is a protein that in humans is encoded by the LAMA1 gene.

Insulin-like growth factor 2 mRNA-binding protein 1 is a protein that in humans is encoded by the IGF2BP1 gene.

Retinol binding protein 1, cellular, also known as RBP1, is a protein that in humans is encoded by the RBP1 gene.

Vigilin is a 110 kDa protein that in humans is encoded by the HDLBP gene.

Hyaluronan-binding protein 2 also known as factor VII activating protease (FSAP) is a protein that in humans is encoded by the HABP2 gene.

Latent-transforming growth factor beta-binding protein 1 is a protein that in humans is encoded by the LTBP1 gene.

Macrophage-stimulating protein (MSP), also known as hepatocyte growth factor-like protein, is a protein that in humans is encoded by the MST1 gene.

Insulin-like growth factor 2 mRNA-binding protein 3 is a protein that in humans is encoded by the IGF2BP3 gene.

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Ficolin-1, and also commonly termed M-ficolin is a protein that in humans is encoded by the FCN1 gene.

Stabilin-1 is a protein that in humans is encoded by the STAB1 gene.

Insulin-like growth factor 2 mRNA-binding protein 2 is a protein that in humans is encoded by the IGF2BP2 gene.

Sialic acid-binding Ig-like lectin 10 is a protein that in humans is encoded by the SIGLEC10 gene. Siglec-G is often referred to as the murine paralog of human Siglec-10

References

1 2 3 GRCh38: Ensembl release 89: ENSG00000163815 - Ensembl, May 2017
1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000025784 - Ensembl, May 2017
↑ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ "Entrez Gene: CLEC3B C-type lectin domain family 3, member B".

External links

Human CLEC3B genome location and CLEC3B gene details page in the UCSC Genome Browser .

Wewer UM, Albrechtsen R (1992). "Tetranectin, a plasminogen kringle 4-binding protein. Cloning and gene expression pattern in human colon cancer". Lab. Invest. 67 (2): 253–62. PMID 1354271.
Berglund L, Petersen TE (1992). "The gene structure of tetranectin, a plasminogen binding protein". FEBS Lett. 309 (1): 15–9. doi: 10.1016/0014-5793(92)80729-Z . PMID 1511740. S2CID 35630722.
Borregaard N, Christensen L, Bejerrum OW, et al. (1990). "Identification of a highly mobilizable subset of human neutrophil intracellular vesicles that contains tetranectin and latent alkaline phosphatase". J. Clin. Invest. 85 (2): 408–16. doi:10.1172/JCI114453. PMC 296439 . PMID 2298916.
Clemmensen I (1990). "Interaction of tetranectin with sulphated polysaccharides and trypan blue". Scand. J. Clin. Lab. Invest. 49 (8): 719–25. doi:10.3109/00365518909091550. PMID 2533389.
Clemmensen I, Petersen LC, Kluft C (1986). "Purification and characterization of a novel, oligomeric, plasminogen kringle 4 binding protein from human plasma: tetranectin". Eur. J. Biochem. 156 (2): 327–33. doi:10.1111/j.1432-1033.1986.tb09586.x. PMID 3009181.
Fuhlendorff J, Clemmensen I, Magnusson S (1988). "Primary structure of tetranectin, a plasminogen kringle 4 binding plasma protein: homology with asialoglycoprotein receptors and cartilage proteoglycan core protein". Biochemistry. 26 (21): 6757–64. doi:10.1021/bi00395a027. PMID 3427041.
Wewer UM, Ibaraki K, Schjørring P, et al. (1995). "A potential role for tetranectin in mineralization during osteogenesis". J. Cell Biol. 127 (6 Pt 1): 1767–75. doi:10.1083/jcb.127.6.1767. PMC 2120295 . PMID 7798325.
Nielsen H, Clemmensen I, Kharazmi A (1993). "Tetranectin: a novel secretory protein from human monocytes". Scand. J. Immunol. 37 (1): 39–42. doi:10.1111/j.1365-3083.1993.tb01662.x. PMID 8418471. S2CID 6469331.
Durkin ME, Naylor SL, Albrechtsen R, Wewer UM (1997). "Assignment of the gene for human tetranectin (TNA) to chromosome 3p22→p21.3 by somatic cell hybrid mapping". Cytogenet. Cell Genet. 76 (1–2): 39–40. doi:10.1159/000134509. PMID 9154122.
Nielsen BB, Kastrup JS, Rasmussen H, et al. (1997). "Crystal structure of tetranectin, a trimeric plasminogen-binding protein with an alpha-helical coiled coil". FEBS Lett. 412 (2): 388–96. doi: 10.1016/S0014-5793(97)00664-9 . PMID 9256258. S2CID 9290914.
Kastrup JS, Nielsen BB, Rasmussen H, et al. (1998). "Structure of the C-type lectin carbohydrate recognition domain of human tetranectin". Acta Crystallogr. D. 54 (Pt 5): 757–66. doi:10.1107/S0907444997016806. PMID 9757090.
Jaquinod M, Holtet TL, Etzerodt M, et al. (2000). "Mass spectrometric characterisation of post-translational modification and genetic variation in human tetranectin". Biol. Chem. 380 (11): 1307–14. doi:10.1515/BC.1999.166. PMID 10614823. S2CID 9060086.
Lorentsen RH, Graversen JH, Caterer NR, et al. (2000). "The heparin-binding site in tetranectin is located in the N-terminal region and binding does not involve the carbohydrate recognition domain". Biochem. J. 347. Pt 1 (1): 83–7. doi:10.1042/0264-6021:3470083. PMC 1220934 . PMID 10727405.
Graversen JH, Jacobsen C, Sigurskjold BW, et al. (2001). "Mutational analysis of affinity and selectivity of kringle-tetranectin interaction. Grafting novel kringle affinity ontp the trtranectin lectin scaffold". J. Biol. Chem. 275 (48): 37390–6. doi: 10.1074/jbc.M004873200 . PMID 10964919.
Arvanitis DL, Kamper EF, Kopeikina L, et al. (2002). "Tetranectin expression in gastric adenocarcinomas". Histol. Histopathol. 17 (2): 471–5. PMID 11962752.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC 139241 . PMID 12477932.
Westergaard UB, Andersen MH, Heegaard CW, et al. (2003). "Tetranectin binds hepatocyte growth factor and tissue-type plasminogen activator". Eur. J. Biochem. 270 (8): 1850–4. doi: 10.1046/j.1432-1033.2003.03549.x . PMID 12694198.
Anderson NL, Polanski M, Pieper R, et al. (2004). "The human plasma proteome: a nonredundant list developed by combination of four separate sources". Mol. Cell. Proteomics. 3 (4): 311–26. doi: 10.1074/mcp.M300127-MCP200 . PMID 14718574.
Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928 . PMID 15489334.
Hermann M, Pirkebner D, Draxl A, et al. (2005). "In the search of potential human islet stem cells: is tetranectin showing us the way?". Transplant. Proc. 37 (2): 1322–5. doi:10.1016/j.transproceed.2004.12.050. PMID 15848710.

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[refGRCh38Ensembl-1] 1 2 3 GRCh38: Ensembl release 89: ENSG00000163815 - Ensembl, May 2017

[refGRCm38Ensembl-2] 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000025784 - Ensembl, May 2017

[3] "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[4] "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[entrez-5] "Entrez Gene: CLEC3B C-type lectin domain family 3, member B".

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CLEC3B

Contents

Related Research Articles

References

External links

Further reading