CSTF1

CSTF1
Identifiers
Aliases	CSTF1 , CstF-50, CstFp50, cleavage stimulation factor subunit 1
External IDs	OMIM: 600369; MGI: 1914587; HomoloGene: 1012; GeneCards: CSTF1; OMA:CSTF1 - orthologs
Gene location (Human) Chr. Chromosome 20 (human) [1] Band 20q13.2-q13.31 Start 56,392,371 bp [1] End 56,406,362 bp [1]
Gene location (Mouse) Chr. Chromosome 2 (mouse) [2] Band 2 H3|2 94.84 cM Start 172,212,601 bp [2] End 172,224,368 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in testicle secondary oocyte Achilles tendon gonad islet of Langerhans stromal cell of endometrium ventricular zone rectum granulocyte body of pancreas Top expressed in spermatid seminiferous tubule spermatocyte yolk sac epiblast ventricular zone secondary oocyte Ileal epithelium tail of embryo embryo More reference expression data BioGPS More reference expression data
Gene ontology Molecular function protein binding RNA binding Cellular component nucleus nucleoplasm mRNA cleavage stimulating factor complex Biological process mRNA splicing, via spliceosome termination of RNA polymerase II transcription mRNA processing mRNA 3'-end processing Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 1477 67337 Ensembl ENSG00000101138 ENSMUSG00000027498 UniProt Q05048 Q99LC2 RefSeq (mRNA) NM_001033521 NM_001033522 NM_001324 NM_024199 RefSeq (protein) NP_001028693 NP_001028694 NP_001315 NP_077161 Location (UCSC) Chr 20: 56.39 – 56.41 Mb Chr 2: 172.21 – 172.22 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Cleavage stimulation factor 50 kDa subunit is a protein that in humans is encoded by the CSTF1 gene. ^{[5] [6] [7]}

This gene encodes one of three subunits which combine to form cleavage stimulation factor (CSTF). CSTF is involved in the polyadenylation and 3' end cleavage of pre-mRNAs. Similar to mammalian G protein beta subunits, this protein contains transducin-like repeats. Several transcript variants with different 5' UTR, but encoding the same protein, have been found for this gene. ^[7]

Interactions

CSTF1 has been shown to interact with BARD1. ^{[6] [8]}

References

1. GRCh38: Ensembl release 89: ENSG00000101138 – Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000027498 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Takagaki Y, Manley JL (November 1992). "A human polyadenylation factor is a G protein beta-subunit homologue". The Journal of Biological Chemistry. 267 (33): 23471–4. doi: 10.1016/S0021-9258(18)35861-7 . PMID   1358884.
6. Kleiman FE, Manley JL (March 2001). "The BARD1-CstF-50 interaction links mRNA 3' end formation to DNA damage and tumor suppression". Cell. 104 (5): 743–53. doi: 10.1016/S0092-8674(01)00270-7 . PMID   11257228. S2CID   15022237.
7. "Entrez Gene: CSTF1 cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa".
8. Kleiman FE, Manley JL (September 1999). "Functional interaction of BRCA1-associated BARD1 with polyadenylation factor CstF-50". Science. 285 (5433): 1576–9. doi:10.1126/science.285.5433.1576. PMID   10477523.

External links

• Human CSTF1 genome location and CSTF1 gene details page in the UCSC Genome Browser .

Further reading

• Takagaki Y, MacDonald CC, Shenk T, Manley JL (February 1992). "The human 64-kDa polyadenylylation factor contains a ribonucleoprotein-type RNA binding domain and unusual auxiliary motifs". Proceedings of the National Academy of Sciences of the United States of America. 89 (4): 1403–7. Bibcode:1992PNAS...89.1403T. doi: 10.1073/pnas.89.4.1403 . PMC   48459 . PMID   1741396.
• Murthy KG, Manley JL (November 1995). "The 160-kD subunit of human cleavage-polyadenylation specificity factor coordinates pre-mRNA 3'-end formation". Genes & Development. 9 (21): 2672–83. doi: 10.1101/gad.9.21.2672 . PMID   7590244.
• Takagaki Y, Manley JL (December 1994). "A polyadenylation factor subunit is the human homologue of the Drosophila suppressor of forked protein". Nature. 372 (6505): 471–4. Bibcode:1994Natur.372..471T. doi:10.1038/372471a0. PMID   7984242. S2CID   4329672.
• Rüegsegger U, Beyer K, Keller W (March 1996). "Purification and characterization of human cleavage factor Im involved in the 3' end processing of messenger RNA precursors". The Journal of Biological Chemistry. 271 (11): 6107–13. doi: 10.1074/jbc.271.11.6107 . PMID   8626397.
• Kleiman FE, Manley JL (September 1999). "Functional interaction of BRCA1-associated BARD1 with polyadenylation factor CstF-50". Science. 285 (5433): 1576–9. doi:10.1126/science.285.5433.1576. PMID   10477523.
• Takagaki Y, Manley JL (March 2000). "Complex protein interactions within the human polyadenylation machinery identify a novel component". Molecular and Cellular Biology. 20 (5): 1515–25. doi:10.1128/MCB.20.5.1515-1525.2000. PMC   85326 . PMID   10669729.
• Fong N, Bentley DL (July 2001). "Capping, splicing, and 3' processing are independently stimulated by RNA polymerase II: different functions for different segments of the CTD". Genes & Development. 15 (14): 1783–95. doi:10.1101/gad.889101. PMC   312735 . PMID   11459828.
• Andersen JS, Lyon CE, Fox AH, Leung AK, Lam YW, Steen H, Mann M, Lamond AI (January 2002). "Directed proteomic analysis of the human nucleolus". Current Biology. 12 (1): 1–11. Bibcode:2002CBio...12....1A. doi: 10.1016/S0960-9822(01)00650-9 . PMID   11790298. S2CID   14132033.
• Rush J, Moritz A, Lee KA, Guo A, Goss VL, Spek EJ, Zhang H, Zha XM, Polakiewicz RD, Comb MJ (January 2005). "Immunoaffinity profiling of tyrosine phosphorylation in cancer cells". Nature Biotechnology. 23 (1): 94–101. doi:10.1038/nbt1046. PMID   15592455. S2CID   7200157.
• Tsuzuki M, Wu W, Nishikawa H, Hayami R, Oyake D, Yabuki Y, Fukuda M, Ohta T (February 2006). "A truncated splice variant of human BARD1 that lacks the RING finger and ankyrin repeats". Cancer Letters. 233 (1): 108–16. doi:10.1016/j.canlet.2005.03.012. PMID   15878232.