Basidiomycota is one of two large divisions that, together with the Ascomycota, constitute the subkingdom Dikarya within the kingdom Fungi. Members are known as basidiomycetes. More specifically, Basidiomycota includes these groups: agarics, puffballs, stinkhorns, bracket fungi, other polypores, jelly fungi, boletes, chanterelles, earth stars, smuts, bunts, rusts, mirror yeasts, and Cryptococcus, the human pathogenic yeast. Basidiomycota are filamentous fungi composed of hyphae and reproduce sexually via the formation of specialized club-shaped end cells called basidia that normally bear external meiospores. These specialized spores are called basidiospores. However, some Basidiomycota are obligate asexual reproducers. Basidiomycota that reproduce asexually can typically be recognized as members of this division by gross similarity to others, by the formation of a distinctive anatomical feature, cell wall components, and definitively by phylogenetic molecular analysis of DNA sequence data.
Ascomycota is a phylum of the kingdom Fungi that, together with the Basidiomycota, forms the subkingdom Dikarya. Its members are commonly known as the sac fungi or ascomycetes. It is the largest phylum of Fungi, with over 64,000 species. The defining feature of this fungal group is the "ascus", a microscopic sexual structure in which nonmotile spores, called ascospores, are formed. However, some species of the Ascomycota are asexual, meaning that they do not have a sexual cycle and thus do not form asci or ascospores. Familiar examples of sac fungi include morels, truffles, brewers' and bakers' yeast, dead man's fingers, and cup fungi. The fungal symbionts in the majority of lichens such as Cladonia belong to the Ascomycota.
A hypha is a long, branching, filamentous structure of a fungus, oomycete, or actinobacterium. In most fungi, hyphae are the main mode of vegetative growth, and are collectively called a mycelium.
Zygomycota, or zygote fungi, is a former division or phylum of the kingdom Fungi. The members are now part of two phyla: the Mucoromycota and Zoopagomycota. Approximately 1060 species are known. They are mostly terrestrial in habitat, living in soil or on decaying plant or animal material. Some are parasites of plants, insects, and small animals, while others form symbiotic relationships with plants. Zygomycete hyphae may be coenocytic, forming septa only where gametes are formed or to wall off dead hyphae. Zygomycota is no longer recognised as it was not believed to be truly monophyletic.
An ascus is the sexual spore-bearing cell produced in ascomycete fungi. Each ascus usually contains eight ascospores, produced by meiosis followed, in most species, by a mitotic cell division. However, asci in some genera or species can occur in numbers of one, two, four, or multiples of four. In a few cases, the ascospores can bud off conidia that may fill the asci with hundreds of conidia, or the ascospores may fragment, e.g. some Cordyceps, also filling the asci with smaller cells. Ascospores are nonmotile, usually single celled, but not infrequently may be coenocytic, and in some cases coenocytic in multiple planes. Mitotic divisions within the developing spores populate each resulting cell in septate ascospores with nuclei. The term ocular chamber, or oculus, refers to the epiplasm that is surrounded by the "bourrelet".
Heterothallic species have sexes that reside in different individuals. The term is applied particularly to distinguish heterothallic fungi, which require two compatible partners to produce sexual spores, from homothallic ones, which are capable of sexual reproduction from a single organism.
Plasmogamy is a stage in the sexual reproduction of fungi, in which the protoplasm of two parent cells fuse without the fusion of nuclei, effectively bringing two haploid nuclei close together in the same cell. This state is followed by karyogamy, where the two nuclei fuse and then undergo meiosis to produce spores. The dikaryotic state that comes after plasmogamy will often persist for many generations before the fungi undergoes karyogamy. In lower fungi however, plasmogamy is usually immediately followed by karyogamy. A comparative genomic study indicated the presence of the machinery for plasmogamy, karyogamy and meiosis in the Amoebozoa.
A heterokaryon is a multinucleate cell that contains genetically different nuclei. Heterokaryotic and heterokaryosis are derived terms. This is a special type of syncytium. This can occur naturally, such as in the mycelium of fungi during sexual reproduction, or artificially as formed by the experimental fusion of two genetically different cells, as e.g., in hybridoma technology.
Saccharomycotina is a subdivision (subphylum) of the division (phylum) Ascomycota in the kingdom Fungi. It comprises most of the ascomycete yeasts. The members of Saccharomycotina reproduce by budding and they do not produce ascocarps.
Fungi are a diverse group of organisms that employ a huge variety of reproductive strategies, ranging from fully asexual to almost exclusively sexual species. Most species can reproduce both sexually and asexually, alternating between haploid and diploid forms. This contrasts with many eukaryotes such as mammals, where the adults are always diploid and produce haploid gametes which combine to form the next generation. In fungi, both haploid and diploid forms can reproduce – haploid individuals can undergo asexual reproduction while diploid forms can produce gametes that combine to give rise to the next generation.
A clamp connection is a hook-like structure formed by growing hyphal cells of certain fungi. It is a characteristic feature of basidiomycete fungi. It is created to ensure that each cell, or segment of hypha separated by septa, receives a set of differing nuclei, which are obtained through mating of hyphae of differing sexual types. It is used to maintain genetic variation within the hypha much like the mechanisms found in croziers (hooks) during the sexual reproduction of ascomycetes.
Sporogenesis is the production of spores in biology. The term is also used to refer to the process of reproduction via spores. Reproductive spores were found to be formed in eukaryotic organisms, such as plants, algae and fungi, during their normal reproductive life cycle. Dormant spores are formed, for example by certain fungi and algae, primarily in response to unfavorable growing conditions. Most eukaryotic spores are haploid and form through cell division, though some types are diploid or dikaryons and form through cell fusion.
A crozier is an anatomical feature of many fungi in the phylum Ascomycota that forms at the base of asci and looks like a hook-topped shepherd’s staff or stylized religious crosier. Croziers resemble and function similarly to clamp connections on the dikaryotic hyphae of Basidiomycota.
Dikarya is a subkingdom of Fungi that includes the divisions Ascomycota and Basidiomycota, both of which in general produce dikaryons, may be filamentous or unicellular, but are always without flagella. The Dikarya are most of the so-called "higher fungi", but also include many anamorphic species that would have been classified as molds in historical literature. Phylogenetically the two divisions regularly group together. In a 1998 publication, Thomas Cavalier-Smith referred to this group as the Neomycota.
Armillaria tabescens is a species of fungus in the family Physalacriaceae. It is a plant pathogen. The mycelium of the fungus is bioluminescent.
The parasexual cycle, a process restricted to fungi and single-celled organisms, is a nonsexual mechanism of parasexuality for transferring genetic material without meiosis or the development of sexual structures. It was first described by Italian geneticist Guido Pontecorvo in 1956 during studies on Aspergillus nidulans. A parasexual cycle is initiated by the fusion of hyphae (anastomosis) during which nuclei and other cytoplasmic components occupy the same cell. Fusion of the unlike nuclei in the cell of the heterokaryon results in formation of a diploid nucleus (karyogamy), which is believed to be unstable and can produce segregants by recombination involving mitotic crossing-over and haploidization. Mitotic crossing-over can lead to the exchange of genes on chromosomes; while haploidization probably involves mitotic nondisjunctions which randomly reassort the chromosomes and result in the production of aneuploid and haploid cells. Like a sexual cycle, parasexuality gives the species the opportunity to recombine the genome and produce new genotypes in their offspring. Unlike a sexual cycle, the process lacks coordination and is exclusively mitotic.
Entorrhizomycetes is the sole class in the phylum Entorrhizomycota within the Fungi subkingdom Dikarya along with Basidiomycota and Ascomycota. It contains three genera and is a small group of teliosporic root parasites that form galls on plants in the Juncaceae (rush) and Cyperaceae (sedge) families. Prior to 2015 this phylum was placed under the subdivision Ustilaginomycotina. A 2015 study did a "comprehensive five-gene analyses" of Entorrhiza and concluded that the former class Entorrhizomycetes is possibly either a close sister group to the rest of Dikarya or Basidiomycota.
Sporoidiobolus salmonicolor is a yeast-like fungus in the Basidiomycota more commonly known by the name of its asexual yeast-like state, Sporobolomyces salmonicolor. It is generally considered a Biosafety Risk Group 1 fungus; however isolates of S. salmonicolor have been recovered from cerebrospinal fluid, infected skin, a nasal polyp, lymphadenitis and a case of endophthalmitis. It has also been reported in AIDS-related infections. The fungus exists predominantly in the asexual state as a unicellular, haploid yeast yet this species can sometimes produce a sexual state when conjugation of compatible yeast cells occurs. The asexual form consists of a characteristic, pink, ballistosporic yeast. Ballistoconidia are borne from slender extensions of the cell known as sterigma, and are forcibly ejected into the air upon maturity. Levels of airborne yeast cells peak during the night and are abundant in areas of decaying leaves and grains. Three varieties of Sporobolomyces salmonicolor have been described; S. salmonicolor var. albus, S. salmonicolor var. fischerii, and S. salmonicolor var. salmoneus.
Cunninghamella bertholletiae is a species of zygomycetous fungi in the order Mucorales. It is found globally, with increased prevalence in Mediterranean and subtropical climates. It typically grows as a saprotroph and is found in a wide variety of substrates, including soil, fruits, vegetables, nuts, crops, and human and animal waste. Although infections are still rare, C. betholletiae is emerging as an opportunistic human pathogen, predominantly in immunocompromised people, leukemia patients, and people with uncontrolled diabetes. Cunninghamella bertholletiae infections are often highly invasive, and can be more difficult to treat with antifungal drugs than infections with other species of the Mucorales, making prompt and accurate recognition and diagnosis of mycoses caused by this fungus an important medical concern.
This glossary of mycology is a list of definitions of terms and concepts relevant to mycology, the study of fungi. Terms in common with other fields, if repeated here, generally focus on their mycology-specific meaning. Related terms can be found in glossary of biology and glossary of botany, among others. List of Latin and Greek words commonly used in systematic names and Botanical Latin may also be relevant, although some prefixes and suffixes very common in mycology are repeated here for clarity.
