Dikarya

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Dikarya
Basidiomycota collage.jpg
Diversity of Basidiomycota clockwise from top-left, which includes fly-agaric (Amanita muscaria), Dacrymyces palmatus , Clathrus ruber , porcini (Boletus edulis), Exobasidium vaccinii , bamboo mushroom (Phallus indusiatus), and Meredithblackwellia eburnea
Ascomycota collage.jpg
Diversity of Ascomycota clockwise from top-left, which includes common morel (Morchella esculenta), Neolecta vitellina , black truffle (Tuber melanosporum), Sarcoscypha austriaca , Penicillium , Rhizocarpon , fission yeast (Schizosaccharomyces pombe), and Microsporum canis
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Eukaryota
Kingdom: Fungi
Clade: Symbiomycota
Subkingdom: Dikarya
Hibbett, T.Y.James & Vilgalys (2007) [1]
Divisions

Ascomycota
Basidiomycota
Entorrhizomycota

Synonyms [1] [2]

Carpomycetaceae Bessey (1907)
Neomycota Caval.-Sm. (1998) Dikaryomycota W. B. Kendr. 1985

Contents

Dikarya is a subkingdom of Fungi that includes the divisions Ascomycota and Basidiomycota, both of which in general produce dikaryons, may be filamentous or unicellular, but are always without flagella. The Dikarya are most of the so-called "higher fungi", but also include many anamorphic species that would have been classified as molds in historical literature. [1] Phylogenetically the two divisions regularly group together. [3] [4] In a 1998 publication, Thomas Cavalier-Smith referred to this group as the Neomycota. [5]

Phylogeny

Unikonta   

Amoebozoa

Opisthokonta;
Holozoa

Animalia

 

Holomycota

Nucleariids

Fungi

Microsporidia

Chytridiomycota

Neocallimastigomycota

Blastocladiomycota

Zoopagomycotina

Kickxellomycotina

Entomophthoromycotina

Mucoromycotina

Glomeromycota

  Dikarya  

Ascomycota

Basidiomycota

Phylogeny of the Dikarya and upper-level taxa in Kingdom Fungi. [1]

The 2007 classification of Kingdom Fungi is the result of a large-scale collaborative research effort involving dozens of mycologists and other scientists working on fungal taxonomy. [1] It recognizes seven divisions within the Fungi, two of which—the Ascomycota and the Basidiomycota—are contained within a branch representing subkingdom Dikarya. The cladogram depicts the major fungal taxa and their relationship to opisthokont and unikont organisms. The lengths of the branches in this tree are not proportional to evolutionary distances.

Sexual reproduction

Dikaryons shown in a Basidiomycete mitosis cycle. Note the two nuclei coming from two separate original fungi Fungus cell cycle-en.svg
Dikaryons shown in a Basidiomycete mitosis cycle. Note the two nuclei coming from two separate original fungi

Ascomycota

Ascomycota life cycle and morphology 04 01 02 life cycle Ascomycota, ascus (M. Piepenbring).svg
Ascomycota life cycle and morphology

The phylum Ascomycota , or sac fungus, is characterized by formation of meiotic spores called ascospores enclosed in a special sac called an ascus. The genetic components for sexual reproduction appear to be produced by all members of this group. [6]

Basidiomycota

Basidiomycota life cycle and morphology 03 01 07 life cycle Basidiomycota basidium (M. Piepenbring).svg
Basidiomycota life cycle and morphology

The phylum Basidiomycota can be divided into three major lineages: mushrooms, rusts and smuts. Fusion of haploid nuclei (karyogamy) occurs in the basidia, club-shaped end cells. Shortly after formation of the diploid cell, meiosis occurs and the resulting four haploid nuclei migrate into four, usually external cells called basidiospores.

Adaptive function

Sexual reproduction has been proposed to have evolved in both the Ascomycota and Basidiomycota as an adaptation for repair of DNA damage via homologous recombination under stressful conditions. [6]

See also

Related Research Articles

<span class="mw-page-title-main">Basidiomycota</span> Division of fungi

Basidiomycota is one of two large divisions that, together with the Ascomycota, constitute the subkingdom Dikarya within the kingdom Fungi. Members are known as basidiomycetes. More specifically, Basidiomycota includes these groups: agarics, puffballs, stinkhorns, bracket fungi, other polypores, jelly fungi, boletes, chanterelles, earth stars, smuts, bunts, rusts, mirror yeasts, and Cryptococcus, the human pathogenic yeast.

<span class="mw-page-title-main">Ascomycota</span> Division or phylum of fungi

Ascomycota is a phylum of the kingdom Fungi that, together with the Basidiomycota, forms the subkingdom Dikarya. Its members are commonly known as the sac fungi or ascomycetes. It is the largest phylum of Fungi, with over 64,000 species. The defining feature of this fungal group is the "ascus", a microscopic sexual structure in which nonmotile spores, called ascospores, are formed. However, some species of Ascomycota are asexual and thus do not form asci or ascospores. Familiar examples of sac fungi include morels, truffles, brewers' and bakers' yeast, dead man's fingers, and cup fungi. The fungal symbionts in the majority of lichens such as Cladonia belong to the Ascomycota.

<span class="mw-page-title-main">Heterokaryon</span>

A heterokaryon is a multinucleate cell that contains genetically different nuclei. Heterokaryotic and heterokaryosis are derived terms. This is a special type of syncytium. This can occur naturally, such as in the mycelium of fungi during sexual reproduction, or artificially as formed by the experimental fusion of two genetically different cells, as e.g., in hybridoma technology.

<span class="mw-page-title-main">Cristidiscoidea</span> Proposed basal holomycota clade

Cristidiscoidea or Nucleariae is a proposed basal holomycota clade in which Fonticula and Nucleariida emerged, as sister of the fungi. Since it is close to the divergence between the main lineages of fungi and animals, the study of Cristidiscoidea can provide crucial information on the divergent lifestyles of these groups and the evolution of opisthokonts and slime mold multicellularity. The holomycota tree is following Tedersoo et al.

<span class="mw-page-title-main">Dikaryon</span> Nuclear feature unique to certain fungi

The dikaryon is a nuclear feature that is unique to certain fungi. Compatible cell-types can fuse cytoplasms (plasmogamy). When this occurs, the two nuclei of two cells pair off and cohabit without fusing (karyogamy). This can be maintained for all the cells of the hyphae by synchronously dividing so that pairs are passed to newer cells. In the Ascomycota this attribute is most often found in the ascogenous hyphae and ascocarp while the bulk of the mycelium remains monokaryotic. In the Basidiomycota this is the dominant phase, with most Basidiomycota monokaryons weakly growing and short-lived.

<span class="mw-page-title-main">Glomeromycota</span> Phylum of fungi

Glomeromycota are one of eight currently recognized divisions within the kingdom Fungi, with approximately 230 described species. Members of the Glomeromycota form arbuscular mycorrhizas (AMs) with the thalli of bryophytes and the roots of vascular land plants. Not all species have been shown to form AMs, and one, Geosiphon pyriformis, is known not to do so. Instead, it forms an endocytobiotic association with Nostoc cyanobacteria. The majority of evidence shows that the Glomeromycota are dependent on land plants for carbon and energy, but there is recent circumstantial evidence that some species may be able to lead an independent existence. The arbuscular mycorrhizal species are terrestrial and widely distributed in soils worldwide where they form symbioses with the roots of the majority of plant species (>80%). They can also be found in wetlands, including salt-marshes, and associated with epiphytic plants.

<span class="mw-page-title-main">Saccharomycotina</span> Subdivision of fungi

Saccharomycotina is a subdivision (subphylum) of the division (phylum) Ascomycota in the kingdom Fungi. It comprises most of the ascomycete yeasts. The members of Saccharomycotina reproduce by budding and they do not produce ascocarps.

<i>Aspergillus nidulans</i> Species of fungus

Aspergillus nidulans is one of many species of filamentous fungi in the phylum Ascomycota. It has been an important research organism for studying eukaryotic cell biology for over 50 years, being used to study a wide range of subjects including recombination, DNA repair, mutation, cell cycle control, tubulin, chromatin, nucleokinesis, pathogenesis, metabolism, and experimental evolution. It is one of the few species in its genus able to form sexual spores through meiosis, allowing crossing of strains in the laboratory. A. nidulans is a homothallic fungus, meaning it is able to self-fertilize and form fruiting bodies in the absence of a mating partner. It has septate hyphae with a woolly colony texture and white mycelia. The green colour of wild-type colonies is due to pigmentation of the spores, while mutations in the pigmentation pathway can produce other spore colours.

<span class="mw-page-title-main">Mating in fungi</span> Combination of genetic material between compatible mating types

Fungi are a diverse group of organisms that employ a huge variety of reproductive strategies, ranging from fully asexual to almost exclusively sexual species. Most species can reproduce both sexually and asexually, alternating between haploid and diploid forms. This contrasts with most multicellular eukaryotes such as mammals, where the adults are usually diploid and produce haploid gametes which combine to form the next generation. In fungi, both haploid and diploid forms can reproduce – haploid individuals can undergo asexual reproduction while diploid forms can produce gametes that combine to give rise to the next generation.

<i>Taphrina</i> Genus of fungi

Taphrina is a fungal genus within the Ascomycota that causes leaf and catkin curl diseases and witch's brooms of certain flowering plants. One of the more commonly observed species causes peach leaf curl. Taphrina typically grow as yeasts during one phase of their life cycles, then infect plant tissues in which typical hyphae are formed, and ultimately they form a naked layer of asci on the deformed, often brightly pigmented surfaces of their hosts. No discrete fruit body is formed outside of the gall-like or blister-like tissues of the hosts. The asci form a layer lacking paraphyses, and they lack croziers. The ascospores frequently bud into multiple yeast cells within the asci. Phylogenetically, Taphrina is a member of a basal group within the Ascomycota, and type genus for the subphylum Taphrinomycotina, the class Taphrinomycetes, and order Taphrinales.

<span class="mw-page-title-main">Crozier (mycology)</span>

A crozier is an anatomical feature of many fungi in the phylum Ascomycota that forms at the base of asci and looks like a hook-topped shepherd’s staff or stylized religious crosier. Croziers resemble and function similarly to clamp connections on the dikaryotic hyphae of Basidiomycota.

<span class="mw-page-title-main">Blastocladiomycota</span> Phylum of flagellated fungi

Blastocladiomycota is one of the currently recognized phyla within the kingdom Fungi. Blastocladiomycota was originally the order Blastocladiales within the phylum Chytridiomycota until molecular and zoospore ultrastructural characters were used to demonstrate it was not monophyletic with Chytridiomycota. The order was first erected by Petersen for a single genus, Blastocladia, which was originally considered a member of the oomycetes. Accordingly, members of Blastocladiomycota are often referred to colloquially as "chytrids." However, some feel "chytrid" should refer only to members of Chytridiomycota. Thus, members of Blastocladiomyota are commonly called "blastoclads" by mycologists. Alternatively, members of Blastocladiomycota, Chytridiomycota, and Neocallimastigomycota lumped together as the zoosporic true fungi. Blastocladiomycota contains 5 families and approximately 12 genera. This early diverging branch of kingdom Fungi is the first to exhibit alternation of generations. As well, two (once) popular model organisms—Allomyces macrogynus and Blastocladiella emersonii—belong to this phylum.

<span class="mw-page-title-main">Fungus</span> Biological kingdom, separate from plants and animals

A fungus is any member of the group of eukaryotic organisms that includes microorganisms such as yeasts and molds, as well as the more familiar mushrooms. These organisms are classified as one of the traditional eukaryotic kingdoms, along with Animalia, Plantae and either Protista or Protozoa and Chromista.

<span class="mw-page-title-main">Kickxellomycotina</span> Subdivision of fungi

Kickxellomycotina is a fungus grouping. In the subkingdom of Zoopagomyceta Benny, 2007.

<span class="mw-page-title-main">Wallemiomycetes</span> Class of fungi

The Wallemiomycetes are a class of fungi in the division Basidiomycota. It consists of the single order Wallemiales, containing the single family Wallemiaceae, which in turn contains the single genus Wallemia. The phylogenetic origin of the lineage was placed to various parts of Basidiomycota, but according to the analysis of a larger dataset it is a sister group of Agaricomycotina. The genus contains species of xerophilic molds that are found worldwide. The seven described species are distinguished by conidial size, xerotolerance, halotolerance, chaotolerance, growth temperature regimes, extracellular enzyme activity profiles, and secondary metabolite patterns. They are typically isolated from low-moisture foods, indoor air dust, salterns and soil. W. sebi is thought to be one of the causes of the hypersensitivity pneumonitis known as the farmer's lung disease, but since the other species were recognised and separated from W. sebi only recently, their role in the disease cannot be excluded.

<span class="mw-page-title-main">Entorrhizomycetes</span> Class of fungi

Entorrhizomycetes is the sole class in the phylum Entorrhizomycota, within the Fungi subkingdom Dikarya along with Basidiomycota and Ascomycota. It contains three genera and is a small group of teliosporic root parasites that form galls on plants in the Juncaceae (rush) and Cyperaceae (sedge) families. Prior to 2015 this phylum was placed under the subdivision Ustilaginomycotina. A 2015 study did a "comprehensive five-gene analyses" of Entorrhiza and concluded that the former class Entorrhizomycetes is possibly either a close sister group to the rest of Dikarya or Basidiomycota.

<span class="mw-page-title-main">Holomycota</span> Clade containing fungi and some protists

Holomycota or Nucletmycea are a basal Opisthokont clade as sister of the Holozoa. It consists of the Cristidiscoidea and the kingdom Fungi. The position of nucleariids, unicellular free-living phagotrophic amoebae, as the earliest lineage of Holomycota suggests that animals and fungi independently acquired complex multicellularity from a common unicellular ancestor and that the osmotrophic lifestyle was originated later in the divergence of this eukaryotic lineage. Opisthosporidians is a recently proposed taxonomic group that includes aphelids, Microsporidia and Cryptomycota, three groups of endoparasites.

<span class="mw-page-title-main">Mucoromycota</span> Diverse group of molds

Mucoromycota is a division within the kingdom fungi. It includes a diverse group of various molds, including the common bread molds Mucor and Rhizopus. It is a sister phylum to Dikarya.

<span class="mw-page-title-main">Amastigomycota</span> Clade of all fungi without flagella or centrioles, and with unstacked Golgi apparatus cisternae

Amastigomycota or Eufungi is a clade of fungi. It includes all fungi without flagella or centrioles, and with unstacked Golgi apparatus cisternae. Members of this clade are Dikarya and the traditional paraphyletic assemblage "Zygomycota", now divided into several monophyletic phyla.

References

  1. 1 2 3 4 5 Hibbett, D.S.; et al. (March 2007). "A higher level phylogenetic classification of the Fungi". Mycological Research. 111 (5): 509–47. CiteSeerX   10.1.1.626.9582 . doi:10.1016/j.mycres.2007.03.004. PMID   17572334. S2CID   4686378.
  2. Hibbett, DS; Blackwell, M; James, TY; Spatafora, JW; Taylor, JW; Vilgalys, R (July 2018). "Phylogenetic taxon definitions for Fungi, Dikarya, Ascomycota and Basidiomycota". IMA Fungus. 9 (2): 291–298. doi:10.5598/imafungus.2018.09.02.05. PMC   6317587 . PMID   30622884.
  3. Lutzoni, F.; et al. (2004). "Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits". American Journal of Botany. 91 (10): 1446–80. doi:10.3732/ajb.91.10.1446. PMID   21652303.
  4. James, T.Y.; et al. (2006). "Reconstructing the early evolution of Fungi using a six-gene phylogeny" (PDF). Nature. 443 (7113): 818–22. Bibcode:2006Natur.443..818J. doi:10.1038/nature05110. PMID   17051209. S2CID   4302864. Archived from the original (PDF) on 2007-06-11.
  5. Cavalier-Smith, T. (1998). "A revised six-kingdom system of life". Biological Reviews. 73 (3): 203–66. doi:10.1111/j.1469-185X.1998.tb00030.x. PMID   9809012. S2CID   6557779.
  6. 1 2 Wallen RM, Perlin MH (2018). "An Overview of the Function and Maintenance of Sexual Reproduction in Dikaryotic Fungi". Front Microbiol. 9: 503. doi: 10.3389/fmicb.2018.00503 . PMC   5871698 . PMID   29619017.