Holomycota

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Holomycota
Temporal range: Middle OrdovicianPresent 460–0  Ma
Nuclearia sp Nikko.jpg
Nuclearia
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Eukaryota
Clade: Amorphea
Clade: Obazoa
Clade: Opisthokonta
Clade: Holomycota
Liu et al., 2009
Groups [1]
Synonyms
  • Nucletmycea Brown et al. 2009 [2]
  • Holofungi
  • Fungida

Holomycota [3] or Nucletmycea are a basal Opisthokont clade as sister of the Holozoa. It consists of the Cristidiscoidea and the kingdom Fungi. The position of nucleariids, unicellular free-living phagotrophic amoebae, [4] as the earliest lineage of Holomycota suggests that animals and fungi independently acquired complex multicellularity from a common unicellular ancestor and that the osmotrophic lifestyle (one of the fungal hallmarks) was originated later in the divergence of this eukaryotic lineage. Opisthosporidians is a recently proposed taxonomic group that includes aphelids, [5] Microsporidia and Cryptomycota, three groups of endoparasites. [6]

Rozella (Cryptomycota) is the earliest diverging fungal genus in which chitin has been observed at least in some stages of their life cycle, [6] although the chitinous cell wall (another fungal hallmark) and osmotrophy originated in a common ancestor of Blastocladiomycota and Chytridiomycota, which still contain some ancestral characteristics such as the flagellum in zoosporic stage. [7] The groups of fungi with the characteristic hyphal growth, Zoopagomycota, Mucoromycotina and Dikarya, originated from a common ancestor ~700 Mya. [7] Zoopagomycota are mostly pathogens of animals or other fungi, Mucoromycotina is a more diverse group including parasites, saprotrophs or ectomycorrhizal. [6] Dikarya is the group embracing Ascomycota and Basidiomycota, which comprise ~98% of the described fungal species. [7] Because of this rich diversity, Dikarya includes highly morphologically distinct groups, from hyphae or unicellular yeasts (such as the model organism Saccharomyces cerevisiae ) to the complex multicellular fungi popularly known as mushrooms. [7] Contrary to animals and land plants with complex multicellularity, the inferred phylogenetic relationships indicate that fungi acquired and lost multicellularity multiple times along Ascomycota and Basidiomycota evolution. [8]

Phylogeny

The phylogenetic tree depicts the fungi and their close relationship to other organisms, based on the work of Philippe Silar [9] and "The Mycota: A Comprehensive Treatise on Fungi as Experimental Systems for Basic and Applied Research". [10] [11] The holomycota tree is following Tedersoo et al. [12] [13] [14]

Opisthokonts

References

  1. Adl, Sina M.; Simpson, Alastair G. B.; Lane, Christopher E.; Lukeš, Julius; Bass, David; Bowser, Samuel S.; Brown, Matthew W.; Burki, Fabien; Dunthorn, Micah; Hampl, Vladimir; Heiss, Aaron; Hoppenrath, Mona; Lara, Enrique; Le Gall, Line; Lynn, Denis H.; McManus, Hilary; Mitchell, Edward A. D.; Mozley-Stanridge, Sharon E.; Parfrey, Laura W.; Pawlowski, Jan; Rueckert, Sonja; Shadwick, Laura; Schoch, Conrad L.; Smirnov, Alexey; Spiegel, Frederick W. (2012). "The Revised Classification of Eukaryotes". Journal of Eukaryotic Microbiology. 59 (5): 429–514. doi:10.1111/j.1550-7408.2012.00644.x. PMC   3483872 . PMID   23020233.
  2. Brown MW, Spiegel FW, Silberman JD (December 2009). "Phylogeny of the "forgotten" cellular slime mold, Fonticula alba, reveals a key evolutionary branch within Opisthokonta". Mol. Biol. Evol. 26 (12): 2699–709. doi: 10.1093/molbev/msp185 . PMID   19692665.
  3. Lindgren, Lowell (2001). De Luca [Di Luca], Severo. Oxford Music Online. Oxford University Press.
  4. López-Escardó, David; López-García, Purificación; Moreira, David; Ruiz-Trillo, Iñaki; Torruella, Guifré (2017-08-12). "Parvularia atlantis gen. et sp. nov., a Nucleariid Filose Amoeba (Holomycota, Opisthokonta)". Journal of Eukaryotic Microbiology. 65 (2): 170–179. doi:10.1111/jeu.12450. ISSN   1550-7408. PMC   5708529 . PMID   28741861.
  5. Karpov, Sergey; Mamkaeva, Maria A.; Aleoshin, Vladimir; Nassonova, Elena; Lilje, Osu; Gleason, Frank H. (2014). "Morphology, phylogeny, and ecology of the aphelids (Aphelidea, Opisthokonta) and proposal for the new superphylum Opisthosporidia". Frontiers in Microbiology. 5: 112. doi: 10.3389/fmicb.2014.00112 . PMC   3975115 . PMID   24734027.
  6. 1 2 3 Berbee, Mary L.; James, Timothy Y.; Strullu-Derrien, Christine (2017-09-08). "Early Diverging Fungi: Diversity and Impact at the Dawn of Terrestrial Life". Annual Review of Microbiology. 71 (1): 41–60. doi:10.1146/annurev-micro-030117-020324. PMID   28525299.
  7. 1 2 3 4 Stajich, Jason E.; Berbee, Mary L.; Blackwell, Meredith; Hibbett, David S.; James, Timothy Y.; Spatafora, Joseph W.; Taylor, John W. (2009-09-29). "The Fungi". Current Biology. 19 (18): R840 –R845. Bibcode:2009CBio...19.R840S. doi:10.1016/j.cub.2009.07.004. PMC   2913116 . PMID   19788875.
  8. Nguyen, Tu Anh; Cissé, Ousmane H.; Wong, Jie Yun; Zheng, Peng; Hewitt, David; Nowrousian, Minou; Stajich, Jason E.; Jedd, Gregory (2017-02-08). "Innovation and constraint leading to complex multicellularity in the Ascomycota". Nature Communications. 8 14444: ncomms14444. Bibcode:2017NatCo...814444N. doi:10.1038/ncomms14444. PMC   5309816 . PMID   28176784.{{cite journal}}: CS1 maint: article number as page number (link)
  9. Silar P (2016). Protistes Eucaryotes: Origine, Evolution et Biologie des Microbes Eucaryotes. HAL. p. 462. ISBN   978-2-9555841-0-1.
  10. Esser K (2014). The Mycota VII A: Systematics and Evolution (2nd ed.). Springer. p. 461. ISBN   978-3-642-55317-2.
  11. Bass, David; Czech, Lucas; Williams, Bryony A. P.; Berney, Cédric; Dunthorn, Micah; Mahé, Frederic; Torruella, Guifré; Stentiford, Grant D.; Williams, Tom A. (2018-04-28). "Clarifying the Relationships between Microsporidia and Cryptomycota". Journal of Eukaryotic Microbiology. 65 (6): 773–782. doi:10.1111/jeu.12519. ISSN   1066-5234. PMC   6282948 . PMID   29603494.
  12. Tedersoo, Leho; Sánchez-Ramírez, Santiago; Kõljalg, Urmas; Bahram, Mohammad; Döring, Markus; Schigel, Dmitry; May, Tom; Ryberg, Martin; Abarenkov, Kessy (2018). "High-level classification of the Fungi and a tool for evolutionary ecological analyses". Fungal Diversity. 90 (1): 135–159. doi: 10.1007/s13225-018-0401-0 . hdl: 10138/238983 . ISSN   1560-2745.
  13. Lopez-Garcia, Purificacion; Volcker, Eckhard; Sebe-Pedros, Arnau; Burns, John; Karpov, Sergey A.; Moreira, David; Grau-Bove, Xavier; Torruella, Guifre (2018-08-17). "The aphelid-like phagotrophic origins of fungi". bioRxiv: 233882. doi: 10.1101/233882 .{{cite journal}}: CS1 maint: article number as page number (link)
  14. Galindo, Luis Javier; Torruella, Guifré; López-García, Purificación; Ciobanu, Maria; Gutiérrez-Preciado, Ana; Karpov, Sergey A; Moreira, David (2023). "Phylogenomics Supports the Monophyly of Aphelids and Fungi and Identifies New Molecular Synapomorphies". Systematic Biology. 72 (3): 505–515. doi:10.1093/sysbio/syac054. PMID   35900180.