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A flagellate is a cell or organism with one or more whip-like appendages called flagella. The word flagellate also describes a particular construction characteristic of many prokaryotes and eukaryotes and their means of motion. The term presently does not imply any specific relationship or classification of the organisms that possess flagella. However, the term "flagellate" is included in other terms which are more formally characterized.
The Stramenopiles, also called Heterokonts, are a clade of organisms distinguished by the presence of stiff tripartite external hairs. In most species, the hairs are attached to flagella, in some they are attached to other areas of the cellular surface, and in some they have been secondarily lost. Stramenopiles represent one of the three major clades in the SAR supergroup, along with Alveolata and Rhizaria.
In biology, a kingdom is the second highest taxonomic rank, just below domain. Kingdoms are divided into smaller groups called phyla.
Chytridiomycota are a division of zoosporic organisms in the kingdom Fungi, informally known as chytrids. The name is derived from the Ancient Greek χυτρίδιον (khutrídion), meaning "little pot", describing the structure containing unreleased zoospores. Chytrids are one of the earliest diverging fungal lineages, and their membership in kingdom Fungi is demonstrated with chitin cell walls, a posterior whiplash flagellum, absorptive nutrition, use of glycogen as an energy storage compound, and synthesis of lysine by the α-amino adipic acid (AAA) pathway.
Brown algae are a large group of multicellular algae comprising the class Phaeophyceae. They include many seaweeds located in colder waters of the Northern Hemisphere. Brown algae are the major seaweeds of the temperate and polar regions. Many brown algae, such as members of the order Fucales, commonly grow along rocky seashores. Most brown algae live in marine environments, where they play an important role both as food and as a potential habitat. For instance, Macrocystis, a kelp of the order Laminariales, may reach 60 m (200 ft) in length and forms prominent underwater kelp forests that contain a high level of biodiversity. Another example is Sargassum, which creates unique floating mats of seaweed in the tropical waters of the Sargasso Sea that serve as the habitats for many species. Some members of the class, such as kelps, are used by humans as food.
The Oomycetes, or Oomycota, form a distinct phylogenetic lineage of fungus-like eukaryotic microorganisms within the Stramenopiles. They are filamentous and heterotrophic, and can reproduce both sexually and asexually. Sexual reproduction of an oospore is the result of contact between hyphae of male antheridia and female oogonia; these spores can overwinter and are known as resting spores. Asexual reproduction involves the formation of chlamydospores and sporangia, producing motile zoospores. Oomycetes occupy both saprophytic and pathogenic lifestyles, and include some of the most notorious pathogens of plants, causing devastating diseases such as late blight of potato and sudden oak death. One oomycete, the mycoparasite Pythium oligandrum, is used for biocontrol, attacking plant pathogenic fungi. The oomycetes are also often referred to as water molds, although the water-preferring nature which led to that name is not true of most species, which are terrestrial pathogens.
Labyrinthulomycetes (ICBN) or Labyrinthulea (ICZN) is a class of protists that produce a network of filaments or tubes, which serve as tracks for the cells to glide along and absorb nutrients for them. The two main groups are the labyrinthulids and thraustochytrids. They are mostly marine, commonly found as parasites on algae and seagrasses or as decomposers on dead plant material. They also include some parasites of marine invertebrates and mixotrophic species that live in a symbiotic relationship with zoochlorella.
Chytridiomycetes is a class of fungi. Members are found in soil, fresh water, and saline estuaries. They are first known from the Rhynie chert. It has recently been redefined to exclude the taxa Neocallimastigomycota and Monoblepharidomycetes, which are now a phylum and a sister-class respectively.
The Phytomyxea are a class of parasites that are cosmopolitan, obligate biotrophic protist parasites of plants, diatoms, oomycetes and brown algae. They are divided into the orders Plasmodiophorida and Phagomyxida. Plasmodiophorids are best known as pathogens or vectors for viruses of arable crops.
In botany, a zoid or zoïd is a reproductive cell that possesses one or more flagella, and is capable of independent movement. Zoid can refer to either an asexually reproductive spore or a sexually reproductive gamete. In sexually reproductive gametes, zoids can be either male or female depending on the species. For example, some brown alga (Phaeophyceae) reproduce by producing multi-flagellated male and female gametes that recombine to form the diploid sporangia. Zoids are primarily found in some protists, diatoms, green alga, brown alga, non-vascular plants, and a few vascular plants. The most common classification group that produces zoids is the heterokonts or stramenopiles. These include green alga, brown alga, oomycetes, and some protists. The term is generally not used to describe motile, flagellated sperm found in animals. Zoid is also commonly confused for zooid which is a single organism that is part of a colonial animal.
Rhizophydiales are an important group of chytrid fungi. They are found in soil as well as marine and fresh water habitats where they function as parasites and decomposers.
Blastocladiomycota is one of the currently recognized phyla within the kingdom Fungi. Blastocladiomycota was originally the order Blastocladiales within the phylum Chytridiomycota until molecular and zoospore ultrastructural characters were used to demonstrate it was not monophyletic with Chytridiomycota. The order was first erected by Petersen for a single genus, Blastocladia, which was originally considered a member of the oomycetes. Accordingly, members of Blastocladiomycota are often referred to colloquially as "chytrids." However, some feel "chytrid" should refer only to members of Chytridiomycota. Thus, members of Blastocladiomycota are commonly called "blastoclads" by mycologists. Alternatively, members of Blastocladiomycota, Chytridiomycota, and Neocallimastigomycota lumped together as the zoosporic true fungi. Blastocladiomycota contains 5 families and approximately 12 genera. This early diverging branch of kingdom Fungi is the first to exhibit alternation of generations. As well, two (once) popular model organisms—Allomyces macrogynus and Blastocladiella emersonii—belong to this phylum.
Ochrophytes, also known as heterokontophytes or stramenochromes, are a group of algae. They are the photosynthetic stramenopiles, a group of eukaryotes, organisms with a cell nucleus, characterized by the presence of two unequal flagella, one of which has tripartite hairs called mastigonemes. In particular, they are characterized by photosynthetic organelles or plastids enclosed by four membranes, with membrane-bound compartments called thylakoids organized in piles of three, chlorophyll a and c as their photosynthetic pigments, and additional pigments such as β-carotene and xanthophylls. Ochrophytes are one of the most diverse lineages of eukaryotes, containing ecologically important algae such as brown algae and diatoms. They are classified either as phylum Ochrophyta or Heterokontophyta, or as subphylum Ochrophytina within phylum Gyrista. Their plastids are of red algal origin.
Monera is historically a biological kingdom that is made up of prokaryotes. As such, it is composed of single-celled organisms that lack a nucleus. It has been superseded by the Four-kingdom system.
Phycomycetes is an obsolete polyphyletic taxon for certain fungi with aseptate hyphae. It is used in the Engler system. Asexual reproduction takes place by zoospores (motile) or by Aplanospores (non-motile). These spores are endogenously produced in sporangium. A zygospore is formed by fusion of two gametes. These gametes are similar in morphology (isogamous) or dissimilar.
Pseudofungi is a grouping of heterokonts, also known as the Heterokontimycotina. It consists of the Oomycetes and Hyphochytriomycetes. Although numerous biochemical, ultrastructural, and genetic traits clearly place them in the heterokonts, their growth form and mode of nutrition (osmotrophy) resemble that of fungi.
The genus Labyrinthula is part of the protist group Labyrinthulomycetes and contains thirteen species. The major feature of this genus is the formation of an ectoplasmic net secreted by specialized organelles called bothrosomes which surrounds the colony, which is also used by Labyrinthula for moving. The protist reproduces by zoosporulation as it sets some flagellated spores free from a sporangium. One of the flagella of the zoospores has stiff tripartite hairs (mastigonemes) - the defining characteristic of the stramenopiles.
Pythium porphyrae, is a parasitic species of oomycete in the family Pythiaceae. It is the cause of red rot disease or red wasting disease, also called akagusare (赤ぐされ) in Japanese. The specific epithet porphyrae (πορφυρα) stems from the genus of one of its common hosts, Porphyra, and the purple-red color of the lesions on the thallus of the host. However, many of its hosts have been moved from the genus Porphyra to Pyropia.
The plasmodiophores are a group of obligate endoparasitic protists belonging to the subphylum Endomyxa in Cercozoa. Taxonomically, they are united under a single family Plasmodiophoridae, order Plasmodiophorida, sister to the phagomyxids.
Gyrista is a phylum of heterokont protists containing three diverse groups: the mostly photosynthetic Ochrophyta, the parasitic Pseudofungi, and the recently described group of nanoflagellates known as Bigyromonada. Members of this phylum are characterized by the presence of a helix or a double helix/ring system in the ciliary transition region.
References
- ↑ Whittaker, R.H. (1969). "New concepts of kingdoms of organisms". Science. 163 (3863): 150–160. Bibcode:1969Sci...163..150W. CiteSeerX 10.1.1.403.5430 . doi:10.1126/science.163.3863.150. PMID 5762760.
- ↑ Dick, M.W. 1983. Validation of the class name Hyphochytriomycetes. In: Buczacki (ed.), Zoosporic Plant Pathogens, A Modern Perspective. London & New York: Academic Press.
- ↑ M.W.Dick, Straminipilous Fungi: 330, 2001.
- ↑ Bessey, E. A. 1950. Morphology and taxonomy of fungi, .
- ↑ Cavalier-Smith, Prog. Phycol. Res. 4: 324, 1986.
- ↑ Cavalier-Smith, In: Green, Leadbeater, and Diver (eds.), The Chromophyte Algae: 385 (1989).
- ↑ "Chytridiomycota". Archived from the original on 2008-08-22. Retrieved 2009-05-26.
- ↑ David, J. C. (2002). "A preliminary catalogue of the names of fungi above the rank of order". Constancea. 83: 1–30.
- ↑ Van der Auwera G, De Baere R, Van de Peer Y, De Rijk P, Van den Broeck I, De Wachter R (July 1995). "The phylogeny of the Hyphochytriomycota as deduced from ribosomal RNA sequences of Hyphochytrium catenoides". Mol. Biol. Evol. 12 (4): 671–8. doi:10.1093/oxfordjournals.molbev.a040245. PMID 7659021.
