Raphidomonads | |
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Gonyostomum semen | |
Scientific classification | |
Domain: | Eukaryota |
Clade: | Diaphoretickes |
Clade: | SAR |
Clade: | Stramenopiles |
Phylum: | Gyrista |
Subphylum: | Ochrophytina |
Infraphylum: | Chrysista |
Superclass: | Raphidoistia Cavalier-Smith 1986 orth. mut. 2006 |
Class: | Raphidomonadea Chadefaud 1950 ex Silva 1980 |
Subclasses & orders | |
Raphidomonadea is a class of Stramenopiles containing both photosynthetic and phagotrophic protists. The phagotrophic groups are known as Raphopoda, and comprise actinophryid heliozoa and the marine genus Commation . The photosynthetic groups are known as the raphidophyte algae. Their relationship was elucidated through phylogenetic analyses. [1] [2]
Classification based on Cavalier-Smith and Scoble 2013. [1]
The genus Psammamonas , described in 2013, is not placed in any family within the raphidomonads. However, the phylogenetic analysis that accompanied the description placed it as the sister group of Haramonas , in the monotypic family Haramonadaceae. [3]
The genus Chloromorum is not a validly published name. Its first mention is from a 2008 journal article that states its author and publication as "Tomas et al., submitted for publication", [4] but it was never published. The genus contains a single species, Chloromorum toxicum, which is a renaming of the taxon Chattonella cf. verruculosa. Allegedly, Chloromorum composes a new algal class known as Chloromorophyceae, but due to not being validly published (i.e. nomen nudum ), it is an illegal taxon. [5]
The Stramenopiles, also called Heterokonts, are a clade of organisms distinguished by the presence of stiff tripartite external hairs. In most species, the hairs are attached to flagella, in some they are attached to other areas of the cellular surface, and in some they have been secondarily lost. Stramenopiles represent one of the three major clades in the SAR supergroup, along with Alveolata and Rhizaria.
The silicoflagellates are a small group of unicellular photosynthetic protists, or algae, belonging to the supergroup of eukaryotes known as Stramenopiles. They behave as plankton and are present in oceanic waters. They are well-known from harmful algal blooms that cause high mortality of fish. Additionally, they compose a rich fossil record represented by their silica skeletons.
Pedinellales is a group of single-celled algae found in both marine environments and freshwater.
The raphidophytes, formally known as Raphidophycidae or Raphidophyceae, are a small group of eukaryotic algae that includes both marine and freshwater species. All raphidophytes are unicellular, with large cells, but no cell walls. Raphidophytes possess a pair of flagella, organised such that both originate from the same invagination. One flagellum points forwards, and is covered in hair-like mastigonemes, while the other points backwards across the cell surface, lying within a ventral groove. Raphidophytes contain numerous ellipsoid chloroplasts, which contain chlorophylls a, c1 and c2. They also make use of accessory pigments including β-carotene and diadinoxanthin. Unlike other heterokontophytes, raphidophytes do not possess the photoreceptive organelle typical of this group.
Sagenista is a group of heterokonts containing the labyrinthulids and Eogyrea, a class of yet uncultured protists. Originally, it contained the Labyrinthulids and bicosoecids. The bicosoecids have been removed, and Eogyrea were added, in order to make the group monophyletic.
Ochrophytes, also known as heterokontophytes or stramenochromes, are a group of algae. They are the photosynthetic stramenopiles, a group of eukaryotes, organisms with a cell nucleus, characterized by the presence of two unequal flagella, one of which has tripartite hairs called mastigonemes. In particular, they are characterized by photosynthetic organelles or plastids enclosed by four membranes, with membrane-bound compartments called thylakoids organized in piles of three, chlorophyll a and c as their photosynthetic pigments, and additional pigments such as β-carotene and xanthophylls. Ochrophytes are one of the most diverse lineages of eukaryotes, containing ecologically important algae such as brown algae and diatoms. They are classified either as phylum Ochrophyta or Heterokontophyta, or as subphylum Ochrophytina within phylum Gyrista. Their plastids are of red algal origin.
Phaeothamniophycidae is a subclass of heterokont algae. It contains two orders, Phaeothamniales and Pleurochloridellales, and consists of species separated from Chrysophyceae.
Bigyra is a phylum of microscopic eukaryotes that are found at the base of the Stramenopiles clade. It includes three well-known heterotrophic groups Bicosoecida, Opalinata and Labyrinthulomycetes, as well as several small clades initially discovered through environmental DNA samples: Nanomonadea, Placididea, Opalomonadea and Eogyrea. The classification of Bigyra has changed several times since its origin, and its monophyly remains unresolved.
Opalozoa is a subphylum of heterotrophic protists of the phylum Bigyra, and is the sister group to Sagenista. Opalozoans are non-photosynthetic heterokonts that are ancestrally phagotrophic but many times have evolved to be osmotrophic saprotrophs in the gut of vertebrate animals.
Dictyochophyceae sensu lato is a photosynthetic lineage of heterokont algae.
Chattonella is a genus of the marine class raphidophytes associated with red tides and can be found in the phylum Heterokontophyta in stramenopiles. These unicellular flagellates are found in brackish ecosystems. The genus Chattonella is composed of five species: C. subsalsa, C. antiqua, C. marina, C. minima, and C. ovata.
Placidozoa is a recently defined non-photosynthetic lineage of Stramenopiles.
Picophagea, also known as Synchromophyceae, is a class of photosynthetic stramenopiles. The chloroplast of the Synchromophyceae are surrounded by two membranes and arranged in a way where they share the outer pair of membranes. The entire chloroplast complex is surrounded by an additional two outer membranes.
Nanomonadea is a class of biciliate phagotrophic, non-photosynthetic free-living opalozoans, coontaining the sole order Uniciliatida. This monophyletic group previously known as clade MAST-3 is characterized by a single hairless posterior cilium and absence of an anterior cilium.
Gyrista is a phylum of heterokont protists containing three diverse groups: the mostly photosynthetic Ochrophyta, the parasitic Pseudofungi, and the recently described group of nanoflagellates known as Bigyromonada. Members of this phylum are characterized by the presence of a helix or a double helix/ring system in the ciliary transition region.
Olisthodiscus is a genus of heterokont algae, present in marine or brackish waters. It is the only genus in the family Olisthodiscaceae, the order Olisthodiscales, and the class Olisthodiscophyceae. After a long history of controversial classifications, in 2021 it was recognized as a phylogenetically distinct lineage from the rest of ochrophyte classes.
Commation is a genus of marine heterotrophic protists closely related to the actinophryids. It contains two species, Commation cryoporinum and Commation eposianum, discovered in antarctic waters and described in 1993. Currently, the genus is classified within a monotypic family Commatiidae and order Commatiida. Along with the photosynthetic raphidophytes, these organisms compose the class of stramenopiles known as Raphidomonadea.
Commation cryoporinum is a species of heterotrophic protists discovered in 1993 in Antarctic waters. It is one of two species in the Commatiida, an order of stramenopiles closely related to actinophryids, a group of heliozoan protists, and to raphidophytes, a group of algae.
Commation eposianum is a species of heterotrophic protists discovered in 1993 in Antarctic waters. It is one of two species in the Commatiida, an order of stramenopiles closely related to actinophryids, a group of heliozoan protists, and to raphidophytes, a group of algae.
Raphopoda is a grouping of heterotrophic protists. It contains the heterotroph organisms within class Raphidomonadea, classified as two orders: Commatiida, comprised by the sole genus of flagellates Commation, and Actinophryida, an order of heliozoa, amoebae with stiff specialized pseudopodia called axopodia.