| Rigifilida | |
|---|---|
Scientific classification  | |
| Domain: | Eukaryota |
| Clade: | Opimoda |
| Clade: | CRuMs |
| Class: | Hilomonadea Cavalier-Smith 2008 emend. 2012 [1] |
| Order: | Rigifilida Cavalier-Smith in Yabuki et al. 2012 |
| Families | |
Rigifilida is a clade of non-ciliate phagotrophic eukaryotes. It consists of two genera: Micronuclearia and Rigifila .
Cells of rigifilids are covered with either a single or a double-layered submembrane pellicular lamina that makes them rigid in consistence. Slender branching filopodia emanate from a ventral aperture of the cell and are employed to collect bacteria upon which they feed and to attach the organism to the substratum. Around this aperture, the pellicle is reflexed around forming a peristomial collar. Other notable features are flat and irregular shaped mitocondrial cristae, a single dorsal nucleus and the lack of centrioles and cilia. [2]
| Scotokaryota |
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Rigifilida is currently placed in CRuMs. [4]
The centrohelids or centroheliozoa are a large group of heliozoan protists. They include both mobile and sessile forms, found in freshwater and marine environments, especially at some depth.
Amorphea is a taxonomic supergroup that includes the basal Amoebozoa and Obazoa. That latter contains the Opisthokonta, which includes the Fungi, Animals and the Choanomonada, or Choanoflagellates. The taxonomic affinities of the members of this clade were originally described and proposed by Thomas Cavalier-Smith in 2002.
The Apusozoa are a paraphyletic phylum of flagellate eukaryotes. They are usually around 5–20 μm in size, and occur in soils and aquatic habitats, where they feed on bacteria. They are grouped together based on the presence of an organic shell or theca under the dorsal surface of the cell.
Ancyromonas is a genus of basal Eukaryote consisting of heterotrophic flagellates.
Telonemia is a phylum of microscopic eukaryotes. They are unicellular free-living flagellates with a unique combination of cell structures, including a highly complex cytoskeleton unseen in other eukaryotes. They present characteristics similar to their sister group, the SAR supergroup, such as cortical alveoli, tripartite mastigonemes and filopodia. Together, the two lineages compose the TSAR clade. They are classified in three genera and seven species, although numerous undescribed lineages are known. They are detected in all marine and freshwater environments, where they prey on bacteria and small phytoplankton through phagotrophy.
Malawimonadidae is a family of unicellular eukaryotes of outsize importance in understanding eukaryote phylogeny.
Micronuclearia is a genus of free-living protozoa containing the single species Micronuclearia podoventralis. While originally thought to be a nucleariid, as reflected in the name, it is now inferred to be a member of the taxon Rigifilida, and to belong to the 'CRuMs' assemblage.
Loukozoa is a proposed taxon used in some classifications of eukaryotes, consisting of the Metamonada and Malawimonadea. Ancyromonads are closely related to this group, as sister of the entire group, or as sister of the Metamonada. Amorphea may have emerged in this grouping, specifically as sister of the Malawimonads.
The apusomonads are a group of protozoan zooflagellates that glide on surfaces, and mostly consume prokaryotes. They are of particular evolutionary interest because they appear to be the sister group to the Opisthokonts, the clade that includes both animals and fungi. Together with the Breviatea, these form the Obazoa clade.
Ancyromonadida or Planomonadida is a small group of biflagellated protists found in the soil and in aquatic habitats, where they feed on bacteria. Includes freshwater or marine organisms, benthic, dorsoventrally compressed and with two unequal flagellae, each emerging from a separate pocket. The apical anterior flagellum can be very thin or end in the cell membrane, while the posterior flagellum is long and is inserted ventrally or laterally. The cell membrane is supported by a thin single-layered theca and the mitochondrial crests are discoidal/flat.
Collodictyonidae is a group of aquatic, unicellular eukaryotic organisms with two to four terminal flagella. They feed by phagocytosis, ingesting other unicellular organisms like algae and bacteria. The most remarkable fact of this clade is its uncertain position in the tree of life.
Rigifila ramosa is one of the two members of the Rigifilida. It differs from the other member Micronuclearia podoventralis by having two pellicular layers covering the cell instead of a single one. Dorsal filopodia are also thicker and more conspicuous than in Micronuclearia.
Podiates are a proposed clade containing the Amorphea and the organisms now assigned to the clade CRuMs. Ancyromonadida does not appear to have emerged in this grouping. Sarcomastigota is a proposed subkingdom that includes all the podiates that are not animals or fungi. Sulcozoa is a proposed phylum within Sarcomastigota that does not include the phyla Amoebozoa (clade) and Choanozoa (paraphyletic), i.e. it includes the proposed subphyla Apusozoa and Varisulca
Varisulca was a proposed basal Podiate taxon. It encompassed several lineages of heterotrophic protists, most notably the ancyromonads (planomonads), collodictyonids (diphylleids), rigifilids and mantamonadids. Recent evidence suggests that the latter three are closely related to each other, forming a clade called CRuMs, but that this is unlikely to be specifically related to ancyromonads
Tsukubamonas is a monotypic genus of excavates that contains a single species, Tsukubamonas globosaYabuki et al. 2011. T. globosa is a free-living flagellate that was isolated from a pond in the University of Tsukuba, Japan.
Cryptista is a clade of alga-like eukaryotes. It is most likely related to Archaeplastida which includes plants and many algae, within the larger group Diaphoretickes.
Palpitea is a proposed clade of eukaryotes that are related to Archaeplastida and the SAR supergroup.
Obazoa is a proposed sister clade of Amoebozoa. The term Obazoa is based on the OBA acronym for Opisthokonta, Breviatea, and Apusomonadida, the group's three constituent clades.
The Scotokaryotes (Cavalier-Smith) is a proposed basal Neokaryote clade as sister of the Diaphoretickes. Basal Scotokaryote groupings are the Metamonads, the Malawimonas and the Podiata. In this phylogeny the Discoba are sometimes seen as paraphyletic and basal Eukaryotes.
Mantamonads are a group of free-living heterotrophic flagellates that move primarily by gliding on surfaces. They are classified as one genus Mantamonas in the monotypic family Mantamonadidae, order Mantamonadida and class Glissodiscea. Previously, they were classified in Apusozoa as sister of the Apusmonadida on the basis of rRNA analyses. However, mantamonads are currently placed in CRuMs on the basis of phylogenomic analyses that identify their closest relatives as the Diphylleida and Rigifilida.