FAM172A

FAM172A
Identifiers
Aliases	FAM172A , C5orf21, family with sequence similarity 172 member A, Toupee
External IDs	MGI: 1915925; HomoloGene: 12933; GeneCards: FAM172A; OMA:FAM172A - orthologs
Gene location (Human) Chr. Chromosome 5 (human) [1] Band 5q15 Start 93,617,725 bp [1] End 94,111,699 bp [1]
Gene location (Mouse) Chr. Chromosome 13 (mouse) [2] Band 13|13 C1 Start 77,850,152 bp [2] End 78,314,354 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in Achilles tendon tendon of biceps brachii caput epididymis optic nerve epithelium of colon corpus epididymis paraflocculus of cerebellum tail of epididymis bronchial epithelial cell stromal cell of endometrium Top expressed in spermatocyte zygote medial ganglionic eminence Region I of hippocampus proper superior cervical ganglion ventricular zone secondary oocyte genital tubercle thymus hand More reference expression data BioGPS More reference expression data
Gene ontology Molecular function siRNA binding Cellular component endoplasmic reticulum extracellular region nucleus cytoplasm Biological process regulation of alternative mRNA splicing, via spliceosome neural crest cell development mRNA processing RNA splicing heterochromatin assembly by small RNA Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 83989 68675 Ensembl ENSG00000113391 ENSMUSG00000064138 UniProt Q8WUF8 Q3TNH5 RefSeq (mRNA) NM_001163417 NM_001163418 NM_032042 NM_001163419 NM_001163420 NM_138312 RefSeq (protein) NP_001156889 NP_001156890 NP_114431 NP_001156891 NP_001156892 NP_612185 Location (UCSC) Chr 5: 93.62 – 94.11 Mb Chr 13: 77.85 – 78.31 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

UPF0528 protein FAM172A is a protein that in humans is encoded by the FAM172A gene. ^{[5] [6]}

References

1. GRCh38: Ensembl release 89: ENSG00000113391 – Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000064138 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Wiemann S, Weil B, Wellenreuther R, Gassenhuber J, Glassl S, Ansorge W, Bocher M, Blocker H, Bauersachs S, Blum H, Lauber J, Dusterhoft A, Beyer A, Kohrer K, Strack N, Mewes HW, Ottenwalder B, Obermaier B, Tampe J, Heubner D, Wambutt R, Korn B, Klein M, Poustka A (Mar 2001). "Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs". Genome Res. 11 (3): 422–35. doi:10.1101/gr.GR1547R. PMC   311072 . PMID   11230166.
6. "Entrez Gene: C5orf21 chromosome 5 open reading frame 21".

External links

• Human FAM172A genome location and FAM172A gene details page in the UCSC Genome Browser .

Further reading

• Mehrle A, Rosenfelder H, Schupp I, et al. (2006). "The LIFEdb database in 2006". Nucleic Acids Res. 34 (Database issue): D415–8. doi:10.1093/nar/gkj139. PMC   1347501 . PMID   16381901.
• Wiemann S, Arlt D, Huber W, et al. (2004). "From ORFeome to biology: a functional genomics pipeline". Genome Res. 14 (10B): 2136–44. doi:10.1101/gr.2576704. PMC   528930 . PMID   15489336.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC   139241 . PMID   12477932.
• Simpson JC, Wellenreuther R, Poustka A, et al. (2001). "Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing". EMBO Rep. 1 (3): 287–92. doi:10.1093/embo-reports/kvd058. PMC   1083732 . PMID   11256614.
• Hartley JL, Temple GF, Brasch MA (2001). "DNA cloning using in vitro site-specific recombination". Genome Res. 10 (11): 1788–95. doi:10.1101/gr.143000. PMC   310948 . PMID   11076863.
• Yu W, Andersson B, Worley KC, et al. (1997). "Large-scale concatenation cDNA sequencing". Genome Res. 7 (4): 353–8. doi:10.1101/gr.7.4.353. PMC   139146 . PMID   9110174.
• Andersson B, Wentland MA, Ricafrente JY, et al. (1996). "A "double adaptor" method for improved shotgun library construction". Anal. Biochem. 236 (1): 107–13. doi:10.1006/abio.1996.0138. PMID   8619474.