In taxonomy, a group is paraphyletic if it consists of the group's last common ancestor and all its descendants, but excluding a few—typically only one or two—monophyletic subgroups. The group is said to be paraphyletic with respect to the excluded subgroups. In contrast, a monophyletic group includes a common ancestor and all of its descendants. The terms are commonly used in phylogenetics and in the tree model of historical linguistics. Paraphyletic groups are identified by a combination of synapomorphies and symplesiomorphies. If many subgroups are missing from the named group, it is said to be polyparaphyletic.
Didelphis is a genus of New World marsupials. The six species in the genus Didelphis, commonly known as large American opossums, are members of the opossum order, Didelphimorphia.
The 27 species in the genus Marmosa are relatively small Neotropical members of the family Didelphidae. This genus is one of three that are known as mouse opossums. The others are Thylamys and Tlacuatzin, the grayish mouse opossum. Members of the genus Marmosops used to be called "slender mouse opossums", but are now just called "slender opossums". The thirteen members of the Marmosa subgenus Micoureus, known as woolly mouse opossums, were formerly considered to be a separate genus, but were moved into Marmosa in 2009. Based on a comparison of sequences of one mitochondrial and three nuclear genes, three new subgenera, Eomarmosa, Exulomarmosa and Stegomarmosa, were recognized by Voss et al. in 2014. Eomarmosa and Exulomarmosa, as well as Marmosa and Micoureus, are thought to be sister taxa, while Stegomarmosa is viewed as sister to Marmosa plus Micoureus. Exulomarmosa is a mostly trans-Andean clade.
Biotic material or biological derived material is any material that originates from living organisms. Most such materials contain carbon and are capable of decay.
The Global Ocean Sampling Expedition (GOS) is an ocean exploration genome project whose goal is to assess genetic diversity in marine microbial communities and to understand their role in nature's fundamental processes. It was begun as a Sargasso Sea pilot sampling project in August 2003; Craig Venter announced the full expedition on 4 March 2004. The two-year journey, which used Craig Venter's personal yacht, originated in Halifax, Canada, circumnavigated the globe and terminated in the U.S. in January 2006. The expedition sampled water from Halifax, Nova Scotia to the Eastern Tropical Pacific Ocean. During 2007, sampling continued along the west coast of North America.
The Red List Index (RLI), based on the IUCN Red List of Threatened Species, is an indicator of the changing state of global biodiversity. It defines the conservation status of major species groups, and measures trends in extinction risk over time. By conducting conservation assessments at regular intervals, changes in the threat status of species in a taxonomic group can be used to monitor trends in extinction risk. RLIs have been calculated for birds and amphibians, using changes in threat status for species in each of the groups.
Thylamys is a genus of opossums in the family Didelphidae. The premaxillae are rounded rather than pointed. The females lack a pouch. The females' nipples are arranged in two symmetrical rows on the abdomen. All species but T. macrurus store fat in their tails., although this is not necessarily true for all species in the genus. Fossils belonging to the genus date back to the Miocene, with the oldest specimens being found in the Cerro Azul Formation of Argentina and the Honda Group of Colombia. Genetic studies indicate that the genus may have originated around 14 million years ago.
Global biodiversity is the measure of biodiversity on planet Earth and is defined as the total variability of life forms. More than 99 percent of all species that ever lived on Earth are estimated to be extinct. Estimates on the number of Earth's current species range from 2 million to 1 trillion, of which about 1.74 million have been databased thus far and over 80 percent have not yet been described. More recently, in May 2016, scientists reported that 1 trillion species are estimated to be on Earth currently with only one-thousandth of one percent described. The total amount of DNA base pairs on Earth, as a possible approximation of global biodiversity, is estimated at 5.0 x 1037, and weighs 50 billion tonnes. In comparison, the total mass of the biosphere has been estimated to be as much as 4 TtC (trillion tons of carbon).
The SAR supergroup, also just SAR or Harosa, is a clade that includes stramenopiles (heterokonts), alveolates, and Rhizaria. The name is an acronym derived from the first letters of each of these clades; it has been alternatively spelled "RAS". The term "Harosa" has also been used. The SAR supergroup was formulated as the node-based taxon.
An Operational Taxonomic Unit (OTU) is an operational definition used to classify groups of closely related individuals. The term was originally introduced in 1963 by Robert R. Sokal and Peter H. A. Sneath in the context of numerical taxonomy, where an "Operational Taxonomic Unit" is simply the group of organisms currently being studied. In this sense, an OTU is a pragmatic definition to group individuals by similarity, equivalent to but not necessarily in line with classical Linnaean taxonomy or modern evolutionary taxonomy.
ZooBank is an open access website intended to be the official International Commission on Zoological Nomenclature (ICZN) registry of zoological nomenclature. Any nomenclatural acts need to be registered with ZooBank to be "officially" recognized by the ICZN Code of Nomenclature.
DNA barcoding is a method of species identification using a short section of DNA from a specific gene or genes. The premise of DNA barcoding is that, by comparison with a reference library of such DNA sections, an individual sequence can be used to uniquely identify an organism to species, in the same way that a supermarket scanner uses the familiar black stripes of the UPC barcode to identify an item in its stock against its reference database. These "barcodes" are sometimes used in an effort to identify unknown species, parts of an organism, or simply to catalog as many taxa as possible, or to compare with traditional taxonomy in an effort to determine species boundaries.
In metagenomics, binning is the process of grouping reads or contigs and assigning them to individual genome. Binning methods can be based on either compositional features or alignment (similarity), or both.
Imbira is a genus of land planarians found in South America.
Bacteroides ureolyticus is a species in the bacterial genus of Gram-negative, obligately anaerobic bacteria. Bacteroides species are non-endospore-forming bacilli, and may be either motile or non-motile, depending on the species. The DNA base composition is 40–48% GC. Unusual in bacterial organisms, Bacteroides membranes contain sphingolipids. They also contain meso-diaminopimelic acid in their peptidoglycan layer.
Karen Louise Wilson is an Australian botanist.
DNA barcoding of algae is commonly used for species identification and phylogenetic studies. Algae form a phylogenetically heterogeneous group, meaning that the application of a single universal barcode/marker for species delimitation is unfeasible, thus different markers/barcodes are applied for this aim in different algal groups.
Biocuration is the field of life sciences dedicated to organizing biomedical data, information and knowledge into structured formats, such as spreadsheets, tables and knowledge graphs. The biocuration of biomedical knowledge is made possible by the cooperative work of biocurators, software developers and bioinformaticians and is at the base of the work of biological databases.
Gert Wörheide is a German marine biologist who works mainly on marine invertebrates. He earned his doctorate in geobiology from Georg-August-Universität, following this with a post-doctorate at Queensland Museum (1998-2002), where he worked with John Hooper on sponges, a collaboration which continues.
Tatiana Rynearson is an American oceanographer who is a Professor at the University of Rhode Island. Her research considers plankton diversity and abundance. Rynearson has been on several research cruises, including trips to the North Sea, Puget Sound, the Gulf of Mexico and the North Atlantic.
