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The Gemmatimonadota are a phylum of bacteria established in 2003. The phylum contains two classes Gemmatimonadetes and Longimicrobia.
Mycobacterium fluoranthenivorans is a species of the phylum Actinomycetota, belonging to the genus Mycobacterium.
Pseudomonas stutzeri is a Gram-negative soil bacterium that is motile, has a single polar flagellum, and is classified as bacillus, or rod-shaped. While this bacterium was first isolated from human spinal fluid, it has since been found in many different environments due to its various characteristics and metabolic capabilities. P. stutzeri is an opportunistic pathogen in clinical settings, although infections are rare. Based on 16S rRNA analysis, this bacterium has been placed in the P. stutzeri group, to which it lends its name.
The genus Lysobacter belongs to the family Xanthomonadaceae within the Gammaproteobacteria and includes at least 46 named species, including: Lysobacter enzymogenes, L. antibioticus, L. gummosus, L. brunescens, L. defluvii, L. niabensis, L. niastensis, L. daejeonensis, L. yangpyeongensis, L. koreensis, L. concretionis, L. spongiicola, and L. capsici. Lysobacter spp. were originally grouped with myxobacteria because they shared the distinctive trait of gliding motility, but they uniquely display a number of traits that distinguish them from other taxonomically and ecologically related microbes including high genomic G+C content and the lack of flagella. The feature of gliding motility alone has piqued the interest of many, since the role of gliding bacteria in soil ecology is poorly understood. In addition, while a number of different mechanisms have been proposed for gliding motility among a wide range of bacterial species, the genetic mechanism in Lysobacter remains unknown. Members of the Lysobacter group have gained broad interest for production of extracellular enzymes. The group is also regarded as a rich source for production of novel antibiotics, such as β-lactams containing substituted side chains, macrocyclic lactams and macrocyclic peptide or depsipeptide antibiotics like the katanosins.
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Endoproteinase Lys-C is a protease that cleaves proteins on the C-terminal side of lysine residues. This enzyme is naturally found in the bacterium Lysobacter enzymogenes and is commonly used in protein sequencing. Lys-C activity is optimal in the pH range 7.0 - 9.0.
The genus Alishewanella is one of the major branches of the family Alteromonadaceae. It was proposed to accommodate A. fetalis, isolated from an autopsy of a human fetus, in 2000. In 2009, A. aestuarii was isolated from tidal flat sediment and indicated as being a representative of Alishewanella. The third Alishewanella species was isolated from gajami sikhae, a Korean fermented food, in 2009 and was given the name A. jeotgali. Most recently, in 2010, the fourth currently isolated species of Alishewanella, A. agri, was isolated from landfill soil in Korea. Currently these are the only four isolated and characterized species of the genus Alishewanella.
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Lysobacter aestuarii is a Gram-positive and rod-shaped bacterium from the genus of Lysobacter which has been isolated from tidal flat sediments.
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Dyella agri is a Gram-negative bacterium from the genus of Dyella which has been isolated from grassland soil.
Noviherbaspirillum agri is a Gram-negative, rod-shaped, aerobic and motile bacterium from the genus of Noviherbaspirillum which has been isolated from grassland soil from Biratnagar in Nepal.
Noviherbaspirillum autotrophicum is a Gram-negative and rod-shaped bacterium from the genus of Noviherbaspirillum which has been isolated from rice paddy soil.
Alishewanella agri is a Gram-negative, aerobic, rod-shaped and non-motile bacterium from the genus of Alishewanella which has been isolated from landfill soil.
Chitinophaga agri is a Gram-negative, aerobic and long-rod-shaped bacterium from the genus of Chitinophaga.
Thermoleophilum is a genus of Actinomycetota.
Flavobacterium agri is a Gram-negative, strictly aerobic, rod-shaped and non-motile bacterium from the genus of Flavobacterium which has been isolated from rhizospheric soil of the plant Coriandrum sativum.
Mycolicibacterium agri is a species of bacteria from the phylum Actinomycetota that was first isolated from soil. It is non-pigmented and grows rapidly at 25–45 °C on Ogawa egg medium. It has also been isolated from a human skin infection, and raw milk M. agri is capable of degrading octocrylene.
References
- 1 2 Parte, A.C. "Lysobacter". LPSN .
- 1 2 "Lysobacter agri". www.uniprot.org.
- ↑ Singh, H; Won, K; Du, J; Yang, JE; Akter, S; Kim, KY; Yi, TH (September 2015). "Lysobacter agri sp. nov., a bacterium isolated from soil". Antonie van Leeuwenhoek. 108 (3): 553–61. doi:10.1007/s10482-015-0510-7. PMID 26111851. S2CID 16237898.
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