PCDHA2

Last updated
PCDHA2
Protein PCDHA2 PDB 1wuz.png
Identifiers
Aliases PCDHA2 , PCDH-ALPHA2, protocadherin alpha 2
External IDs OMIM: 606308; MGI: 2681880; HomoloGene: 135719; GeneCards: PCDHA2; OMA:PCDHA2 - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_031496
NM_018905
NM_031495

NM_198117

RefSeq (protein)

NP_061728
NP_113683
NP_113684

n/a

Location (UCSC) Chr 5: 140.79 – 141.01 Mb Chr 18: 37.07 – 37.32 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Protocadherin alpha-2 is a protein that in humans is encoded by the PCDHA2 gene. [5] [6]

This gene is a member of the protocadherin alpha gene cluster, one of three related gene clusters tandemly linked on chromosome five that demonstrate an unusual genomic organization similar to that of B-cell and T-cell receptor gene clusters. The alpha gene cluster is composed of 15 cadherin superfamily genes related to the mouse CNR genes and consists of 13 highly similar and 2 more distantly related coding sequences. The tandem array of 15 N-terminal exons, or variable exons, are followed by downstream C-terminal exons, or constant exons, which are shared by all genes in the cluster. The large, uninterrupted N-terminal exons each encode six cadherin ectodomains while the C-terminal exons encode the cytoplasmic domain.

These neural cadherin-like cell adhesion proteins are integral plasma membrane proteins that most likely play a critical role in the establishment and function of specific cell-cell connections in the brain. Alternative splicing has been observed and additional variants have been suggested but their full-length nature has yet to be determined. [6]

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000204969 Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000104148 Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Wu Q, Maniatis T (Jul 1999). "A striking organization of a large family of human neural cadherin-like cell adhesion genes". Cell. 97 (6): 779–90. doi: 10.1016/S0092-8674(00)80789-8 . PMID   10380929. S2CID   6014717.
  6. 1 2 "Entrez Gene: PCDHA2 protocadherin alpha 2".

Further reading