| Pedobacter agri | |
|---|---|
Scientific classification  | |
| Domain: | Bacteria |
| Phylum: | Bacteroidota |
| Class: | Sphingobacteriia |
| Order: | Sphingobacteriales |
| Family: | Sphingobacteriaceae |
| Genus: | Pedobacter |
| Species: | P. agri |
| Binomial name | |
| Pedobacter agri Roh et al. 2008 | |
Pedobacter agri is a species of Gram-negative bacteria. Its genome has been sequenced. [1] Its type strain is PB92(T) (=KCTC 12511(T) =DSM 19486(T)). [2]
The Nitrososphaerota are a phylum of the Archaea proposed in 2008 after the genome of Cenarchaeum symbiosum was sequenced and found to differ significantly from other members of the hyperthermophilic phylum Thermoproteota. Three described species in addition to C. symbiosum are Nitrosopumilus maritimus, Nitrososphaera viennensis, and Nitrososphaera gargensis. The phylum was proposed in 2008 based on phylogenetic data, such as the sequences of these organisms' ribosomal RNA genes, and the presence of a form of type I topoisomerase that was previously thought to be unique to the eukaryotes. This assignment was confirmed by further analysis published in 2010 that examined the genomes of the ammonia-oxidizing archaea Nitrosopumilus maritimus and Nitrososphaera gargensis, concluding that these species form a distinct lineage that includes Cenarchaeum symbiosum. The lipid crenarchaeol has been found only in Nitrososphaerota, making it a potential biomarker for the phylum. Most organisms of this lineage thus far identified are chemolithoautotrophic ammonia-oxidizers and may play important roles in biogeochemical cycles, such as the nitrogen cycle and the carbon cycle. Metagenomic sequencing indicates that they constitute ~1% of the sea surface metagenome across many sites.
Alishewanella is a genus in the phylum Pseudomonadota (bacteria).
Methylocella silvestris is a bacterium from the genus Methylocella spp which are found in many acidic soils and wetlands. Historically, Methylocella silvestris was originally isolated from acidic forest soils in Germany, and it is described as Gram-negative, aerobic, non-pigmented, non-motile, rod-shaped and methane-oxidizing facultative methanotroph. As an aerobic methanotrophic bacteria, Methylocella spp use methane (CH4), and methanol as their main carbon and energy source, as well as multi compounds acetate, pyruvate, succinate, malate, and ethanol. They were known to survive in the cold temperature from 4° to 30° degree of Celsius with the optimum at around 15° to 25 °C, but no more than 36 °C. They grow better in the pH scale between 4.5 to 7.0. It lacks intracytoplasmic membranes common to all methane-oxidizing bacteria except Methylocella, but contain a vesicular membrane system connected to the cytoplasmic membrane. BL2T (=DSM 15510T=NCIMB 13906T) is the type strain.
Desulfitobacterium hafniense is a species of gram positive bacteria, its type strain is DCB-2T..
Pedobacter arcticus is a species of facultative psychrophile bacteria isolated from Arctic soil. It is gram-negative, short rod-shaped and motile, with type strain A12(T). Its genome has been sequenced.
Pedobacter insulae is a species of bacteria. It is Gram-negative, non-motile and rod-shaped, with type strain DS-139(T).
Pedobacter alluvionis is a Gram-negative, rod-shaped, non-spore-forming eubacterial species. Its type strain is NWER-II11T.
Pedobacter borealis is a Gram-negative, rod-shaped, non-spore-forming eubacterial species. Its type strain is G-1T.
Pedobacter lentus is a species of Gram-negative, non-motile, pleomorphic bacteria. Its type strain is DS-40(T).
Pedobacter terricola is a species of Gram-negative, non-motile, pleomorphic bacteria. Its type strain is DS-45(T).
Pedobacter rhizosphaerae is a species of Gram-negative bacteria, first isolated from rhizosphere soil of Brassica campestris, hence its name. Its type strain is 01-96(T).
Pedobacter soli is a species of Gram-negative bacteria, first isolated from rhizosphere soil of Brassica campestris, hence its name. Its type strain is 15-51(T).
Novosphingobium pentaromativorans is a species of high-molecular-mass polycyclic aromatic hydrocarbon-degrading bacterium. It is Gram-negative, yellow-pigmented and halophilic. With type strain US6-1T. Its genome has been sequenced.
Weissella thailandensis is a species of Gram-positive bacteria. It is a homofermentative, sphere-shaped lactic acid bacteria. Its type strain is FS61-1T. Its genome has been sequenced.
Salinibacterium amurskyense is a Gram-positive, non-motile, aerobic, non-spore-forming, irregular, rod-shaped actinobacteria, the type species of its genus.
Opitutus terrae is an obligately anaerobic bacterium first isolated from rice paddy soil, hence its epithet. It is coccus-shaped and is motile by means of a flagellum. Its type strain is PB90-1T. Its genome has been sequenced.
The Coriobacteriia are a class of Gram-positive bacteria within the Actinomycetota phylum. Species within this group are nonsporulating, strict or facultative anaerobes that are capable of thriving in a diverse set of ecological niches. Gordonibacter species are the only members capable of motility by means of flagella within the class. Several species within the Coriobacteriia class have been implicated with human diseases that range in severity. Atopobium, Olsenella, and Cryptobacterium species have responsible for human oral infections including periodontitis, halitosis, and other endodontic infections. Eggerthella species have been associated with severe blood bacteraemia and ulcerative colitis.
Pseudopedobacter saltans is a species of heparinase-producing bacteria. Pedobacter saltans was reclassified to Pseudopedobacter saltans.
Commensalibacter is a genus of Gram-negative, aerobic and rod-shaped bacteria from the family of Acetobacteraceae which was originally isolated from Drosophila melanogaster. The complete genome of the type strain C. intestini A911T has been sequenced.