RAB1B

RAB1B
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 3JZA, 3NKV, 4HLQ, 4I1O
Identifiers
Aliases	RAB1B , member RAS oncogene family
External IDs	OMIM: 612565; MGI: 1923558; HomoloGene: 128838; GeneCards: RAB1B; OMA:RAB1B - orthologs
Gene location (Human) Chr. Chromosome 11 (human) [1] Band 11q13.2 Start 66,268,590 bp [1] End 66,277,492 bp [1]
Gene location (Mouse) Chr. Chromosome 19 (mouse) [2] Band 19|19 A Start 5,149,233 bp [2] End 5,157,100 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in mucosa of transverse colon apex of heart skin of leg body of stomach gastrocnemius muscle right adrenal gland right coronary artery right adrenal cortex popliteal artery left coronary artery Top expressed in lip right kidney granulocyte muscle of thigh yolk sac dentate gyrus of hippocampal formation granule cell ventricular zone superior frontal gyrus spermatocyte primary visual cortex More reference expression data BioGPS More reference expression data
Gene ontology Molecular function nucleotide binding GTP binding protein binding GTPase activity Cellular component cytoplasm phagophore assembly site membrane Golgi apparatus membrane Golgi membrane transport vesicle mitochondrion extracellular exosome endoplasmic reticulum-Golgi intermediate compartment membrane endoplasmic reticulum-Golgi intermediate compartment endoplasmic reticulum membrane cytosol perinuclear region of cytoplasm Biological process establishment of endothelial intestinal barrier positive regulation of glycoprotein metabolic process autophagy regulation of autophagosome assembly endoplasmic reticulum to Golgi vesicle-mediated transport COPII vesicle coating protein transport retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum post-translational protein modification transport intracellular protein transport Rab protein signal transduction Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 81876 76308 Ensembl ENSG00000174903 ENSMUSG00000024870 UniProt Q9H0U4 Q9D1G1 RefSeq (mRNA) NM_030981 NM_029576 RefSeq (protein) NP_112243 NP_083852 Location (UCSC) Chr 11: 66.27 – 66.28 Mb Chr 19: 5.15 – 5.16 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Ras-related protein Rab-1B is a protein that in humans is encoded by the RAB1B gene. ^{[5] [6]}

Interactions

RAB1B has been shown to interact with GOLGA2. ^[7]

References

1. GRCh38: Ensembl release 89: ENSG00000174903 – Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000024870 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Chen D, Guo J, Gahl WA (March 1997). "RAB GTPases expressed in human melanoma cells". Biochim Biophys Acta. 1355 (1): 1–6. doi: 10.1016/S0167-4889(96)00169-3 . PMID   9030196.
6. "Entrez Gene: RAB1B RAB1B, member RAS oncogene family".
7. Weide, T; Bayer M; Köster M; Siebrasse J P; Peters R; Barnekow A (April 2001). "The Golgi matrix protein GM130: a specific interacting partner of the small GTPase rab1b". EMBO Rep. 2 (4). England: 336–41. doi:10.1093/embo-reports/kve065. ISSN   1469-221X. PMC   1083862 . PMID   11306556.

Further reading

• Plutner H, Cox AD, Pind S, et al. (1991). "Rab1b regulates vesicular transport between the endoplasmic reticulum and successive Golgi compartments". J. Cell Biol. 115 (1): 31–43. doi:10.1083/jcb.115.1.31. PMC   2289927 . PMID   1918138.
• Soldati T, Rancaño C, Geissler H, Pfeffer SR (1995). "Rab7 and Rab9 are recruited onto late endosomes by biochemically distinguishable processes". J. Biol. Chem. 270 (43): 25541–8. doi: 10.1074/jbc.270.43.25541 . PMID   7592724.
• Wilson AL, Sheridan KM, Erdman RA, Maltese WA (1996). "Prenylation of a Rab1B mutant with altered GTPase activity is impaired in cell-free systems but not in intact mammalian cells". Biochem. J. 318 (Pt 3): 1007–14. doi:10.1042/bj3181007. PMC   1217717 . PMID   8836150.
• Overmeyer JH, Wilson AL, Erdman RA, Maltese WA (1998). "The Putative "Switch 2" Domain of the Ras-related GTPase, Rab1B, Plays an Essential Role in the Interaction with Rab Escort Protein". Mol. Biol. Cell. 9 (1): 223–35. doi:10.1091/mbc.9.1.223. PMC   25245 . PMID   9437002.
• Weide T, Koster M, Barnekow A (1999). "Inactive and active mutants of rab1b are not tightly integrated into target membranes". Int. J. Oncol. 15 (4): 727–36. doi:10.3892/ijo.15.4.727. PMID   10493955.
• Hartley JL, Temple GF, Brasch MA (2001). "DNA Cloning Using In Vitro Site-Specific Recombination". Genome Res. 10 (11): 1788–95. doi:10.1101/gr.143000. PMC   310948 . PMID   11076863.
• Wiemann S, Weil B, Wellenreuther R, et al. (2001). "Toward a Catalog of Human Genes and Proteins: Sequencing and Analysis of 500 Novel Complete Protein Coding Human cDNAs". Genome Res. 11 (3): 422–35. doi:10.1101/gr.GR1547R. PMC   311072 . PMID   11230166.
• Simpson JC, Wellenreuther R, Poustka A, et al. (2001). "Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing". EMBO Rep. 1 (3): 287–92. doi:10.1093/embo-reports/kvd058. PMC   1083732 . PMID   11256614.
• Weide T, Bayer M, Köster M, et al. (2001). "The Golgi matrix protein GM130: a specific interacting partner of the small GTPase rab1b". EMBO Rep. 2 (4): 336–41. doi:10.1093/embo-reports/kve065. PMC   1083862 . PMID   11306556.
• Zhao H, Ettala O, Väänänen HK (2002). "Intracellular membrane trafficking pathways in bone-resorbing osteoclasts revealed by cloning and subcellular localization studies of small GTP-binding rab proteins". Biochem. Biophys. Res. Commun. 293 (3): 1060–5. doi:10.1016/S0006-291X(02)00326-1. PMID   12051767.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC   139241 . PMID   12477932.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC   528928 . PMID   15489334.
• Wiemann S, Arlt D, Huber W, et al. (2004). "From ORFeome to Biology: A Functional Genomics Pipeline". Genome Res. 14 (10B): 2136–44. doi:10.1101/gr.2576704. PMC   528930 . PMID   15489336.
• Fischer J, Weide T, Barnekow A (2005). "The MICAL proteins and rab1: a possible link to the cytoskeleton?". Biochem. Biophys. Res. Commun. 328 (2): 415–23. doi:10.1016/j.bbrc.2004.12.182. PMID   15694364.
• Bayer M, Fischer J, Kremerskothen J, et al. (2006). "Identification and characterization of Iporin as a novel interaction partner for rab1". BMC Cell Biol. 6 (1): 15. doi: 10.1186/1471-2121-6-15 . PMC   1079803 . PMID   15796781.
• Mehrle A, Rosenfelder H, Schupp I, et al. (2006). "The LIFEdb database in 2006". Nucleic Acids Res. 34 (Database issue): D415–8. doi:10.1093/nar/gkj139. PMC   1347501 . PMID   16381901.
• Ewing RM, Chu P, Elisma F, et al. (2007). "Large-scale mapping of human protein–protein interactions by mass spectrometry". Mol. Syst. Biol. 3 (1): 89. doi:10.1038/msb4100134. PMC   1847948 . PMID   17353931.
• Monetta P, Slavin I, Romero N, Alvarez C (2007). "Rab1b Interacts with GBF1 and Modulates both ARF1 Dynamics and COPI Association". Mol. Biol. Cell. 18 (7): 2400–10. doi:10.1091/mbc.E06-11-1005. PMC   1924811 . PMID   17429068.
• Machner MP, Isberg RR (2007). "A bifunctional bacterial protein links GDI displacement to Rab1 activation". Science. 318 (5852): 974–7. Bibcode:2007Sci...318..974M. doi:10.1126/science.1149121. PMID   17947549. S2CID   21889766.