RBCK1

RBCK1
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 2CRC, 2LGY, 4DBG
Identifiers
Aliases	RBCK1 , C20orf18, HOIL-1, HOIL1, PBMEI, RBCK2, RNF54, UBCE7IP3, XAP3, XAP4, ZRANB4, PGBM1, RANBP2-type and C3HC4-type zinc finger containing 1
External IDs	OMIM: 610924 MGI: 1344372 HomoloGene: 32448 GeneCards: RBCK1
Gene location (Human) Chr. Chromosome 20 (human) [1] Band 20p13 Start 407,498 bp [1] End 432,139 bp [1]
Gene location (Mouse) Chr. Chromosome 2 (mouse) [2] Band 2|2 G3 Start 152,158,254 bp [2] End 152,174,573 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in anterior pituitary right uterine tube right lobe of liver right adrenal gland right lobe of thyroid gland left lobe of thyroid gland canal of the cervix spleen upper lobe of left lung body of stomach Top expressed in superior frontal gyrus ankle joint thymus lip esophagus spleen crypt of lieberkuhn of small intestine neural tube cerebellar cortex duodenum More reference expression data BioGPS More reference expression data
Gene ontology Molecular function DNA-binding transcription factor activity metal ion binding ubiquitin binding protein binding ubiquitin-protein transferase activity transferase activity identical protein binding Cellular component cytosol LUBAC complex Biological process negative regulation of necroptotic process regulation of tumor necrosis factor-mediated signaling pathway positive regulation of NF-kappaB transcription factor activity positive regulation of apoptotic process positive regulation of I-kappaB kinase/NF-kappaB signaling positive regulation of extrinsic apoptotic signaling pathway viral process I-kappaB kinase/NF-kappaB signaling negative regulation of NF-kappaB transcription factor activity T cell receptor signaling pathway protein linear polyubiquitination proteasome-mediated ubiquitin-dependent protein catabolic process protein polyubiquitination positive regulation of NIK/NF-kappaB signaling regulation of transcription, DNA-templated Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 10616 24105 Ensembl ENSG00000125826 ENSMUSG00000027466 UniProt Q9BYM8 Q9WUB0 RefSeq (mRNA) NM_006462 NM_031227 NM_031228 NM_031229 NM_001323956 NM_001323958 NM_001323960 NM_001083921 NM_019705 NM_001355282 RefSeq (protein) NP_001310885 NP_001310887 NP_001310889 NP_006453 NP_112506 NP_001077390 NP_062679 NP_001342211 Location (UCSC) Chr 20: 0.41 – 0.43 Mb Chr 2: 152.16 – 152.17 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

RanBP-type and C3HC4-type zinc finger-containing protein 1 (also known as HOIL-1) is a protein that in humans is encoded by the RBCK1 gene. ^[5]

The protein encoded by this gene is similar to mouse UIP28/UbcM4 interacting protein. Alternative splicing has been observed at this locus, resulting in distinct isoforms. ^[5]

HOIL-1 is an E3 ubiquitin ligase and a part of the linear ubiquitin chain assembly complex (LUBAC), the only known ubiquitin ligase generating linear (Met1) polyubiquitin linkages. ^[6] Although HOIL-1 isn’t responsible for the linear ubiquitin generation, it is a necessary component of LUBAC and ensures its proper assembly and function. ^[7] Interestingly, unlike most E3 ubiquitin ligases, HOIL-1 is able to catalyze oxyester bond formation between the C-terminus of a ubiquitin monomer and Ser/Thr of a different protein. This recently discovered function of HOIL-1 has so far been described in the context of MyD88 signaling. ^[8] Additionally, a catalytically inactive mutant of HOIL-1 (HOIL-1^C458S) led to prolonged IKK activation and increase of inflammatory cytokine production by cytotoxic T cells. The proposed mechanism is that the ester-linked ubiquitin chains limit the size of isopeptide-linked (K63 and/or M1) ubiquitin chains. ^[9]

Clinical significance

A family quartet was found with two children, both affected with a previously unreported disease, characterized by progressive muscular weakness and cardiomyopathy, with normal intelligence. During the course of the study, one additional unrelated patient was found with a comparable phenotype. From whole-genome sequence data, RBCK1, a gene encoding an E3 ubiquitin-protein ligase, was identified as the most likely candidate gene, with two protein-truncating mutations in probands in the first family. Sanger sequencing identified a private homozygous splice variant in RBCK1 in the proband in the second family, yet single-nucleotide polymorphism (SNP) genotyping revealed a 1.2Mb copy-neutral region of homozygosity covering RBCK1. RNA-Seq confirmed aberrant splicing of RBCK1 transcripts, resulting in truncated protein products. ^[10] Ten other individuals with mutations in RBCK1 and overlapping phenotypes have been identified. ^[11]

References

1. GRCh38: Ensembl release 89: ENSG00000125826 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000027466 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. "Entrez Gene: RBCK1 RanBP-type and C3HC4-type zinc finger containing 1".
6. Kirisako T, Kamei K, Murata S, Kato M, Fukumoto H, Kanie M, et al. (October 2006). "A ubiquitin ligase complex assembles linear polyubiquitin chains". The EMBO Journal. 25 (20): 4877–4887. doi:10.1038/sj.emboj.7601360. PMC   1618115 . PMID   17006537.
7. Peltzer N, Darding M, Montinaro A, Draber P, Draberova H, Kupka S, et al. (May 2018). "LUBAC is essential for embryogenesis by preventing cell death and enabling haematopoiesis". Nature. 557 (7703): 112–117. Bibcode:2018Natur.557..112P. doi:10.1038/s41586-018-0064-8. PMC   5947819 . PMID   29695863.
8. Kelsall IR, Zhang J, Knebel A, Arthur JS, Cohen P (July 2019). "The E3 ligase HOIL-1 catalyses ester bond formation between ubiquitin and components of the Myddosome in mammalian cells". Proceedings of the National Academy of Sciences of the United States of America. 116 (27): 13293–13298. Bibcode:2019PNAS..11613293K. doi: 10.1073/pnas.1905873116 . PMC   6613137 . PMID   31209050.
9. Petrova T, Zhang J, Nanda SK, Figueras-Vadillo C, Cohen P (October 2021). "HOIL-1-catalysed, ester-linked ubiquitylation restricts IL-18 signaling in cytotoxic T cells but promotes TLR signalling in macrophages". The FEBS Journal. 288 (20): 5909–5924. doi:10.1111/febs.15896. PMID   33932090. S2CID   233472285.
10. Wang K, Kim C, Bradfield J, Guo Y, Toskala E, Otieno FG, et al. (2013). "Whole-genome DNA/RNA sequencing identifies truncating mutations in RBCK1 in a novel Mendelian disease with neuromuscular and cardiac involvement". Genome Medicine. 5 (7): 67. doi: 10.1186/gm471 . PMC   3971341 . PMID   23889995.
11. Nilsson J, Schoser B, Laforet P, Kalev O, Lindberg C, Romero NB, et al. (December 2013). "Polyglucosan body myopathy caused by defective ubiquitin ligase RBCK1". Annals of Neurology. 74 (6): 914–919. doi:10.1002/ana.23963. PMID   23798481. S2CID   205344695.

Further reading

• Martinez-Noel G, Niedenthal R, Tamura T, Harbers K (July 1999). "A family of structurally related RING finger proteins interacts specifically with the ubiquitin-conjugating enzyme UbcM4". FEBS Letters. 454 (3): 257–261. doi: 10.1016/S0014-5793(99)00823-6 . PMID   10431818. S2CID   46159115.
• Yamanaka K, Ishikawa H, Megumi Y, Tokunaga F, Kanie M, Rouault TA, et al. (April 2003). "Identification of the ubiquitin-protein ligase that recognizes oxidized IRP2". Nature Cell Biology. 5 (4): 336–340. doi:10.1038/ncb952. PMID   12629548. S2CID   20453941.
• Hillman RT, Green RE, Brenner SE (2005). "An unappreciated role for RNA surveillance". Genome Biology. 5 (2): R8. doi: 10.1186/gb-2004-5-2-r8 . PMC   395752 . PMID   14759258.
• Tatematsu K, Yoshimoto N, Koyanagi T, Tokunaga C, Tachibana T, Yoneda Y, et al. (June 2005). "Nuclear-cytoplasmic shuttling of a RING-IBR protein RBCK1 and its functional interaction with nuclear body proteins". The Journal of Biological Chemistry. 280 (24): 22937–22944. doi: 10.1074/jbc.M413476200 . PMID   15833741.
• Zhang Y, Wolf-Yadlin A, Ross PL, Pappin DJ, Rush J, Lauffenburger DA, White FM (September 2005). "Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules". Molecular & Cellular Proteomics. 4 (9): 1240–1250. doi: 10.1074/mcp.M500089-MCP200 . PMID   15951569.
• Yoshimoto N, Tatematsu K, Koyanagi T, Okajima T, Tanizawa K, Kuroda S (September 2005). "Cytoplasmic tethering of a RING protein RBCK1 by its splice variant lacking the RING domain". Biochemical and Biophysical Research Communications. 335 (2): 550–557. doi:10.1016/j.bbrc.2005.07.104. PMID   16083853.
• Bayle J, Lopez S, Iwaï K, Dubreuil P, De Sepulveda P (May 2006). "The E3 ubiquitin ligase HOIL-1 induces the polyubiquitination and degradation of SOCS6 associated proteins". FEBS Letters. 580 (11): 2609–2614. doi: 10.1016/j.febslet.2006.03.093 . PMID   16643902. S2CID   44648698.
• Tian Y, Zhang Y, Zhong B, Wang YY, Diao FC, Wang RP, et al. (June 2007). "RBCK1 negatively regulates tumor necrosis factor- and interleukin-1-triggered NF-kappaB activation by targeting TAB2/3 for degradation". The Journal of Biological Chemistry. 282 (23): 16776–16782. doi: 10.1074/jbc.M701913200 . PMID   17449468.
• Wang K, Kim C, Bradfield J, Guo Y, Toskala E, Otieno FG, et al. (2013). "Whole-genome DNA/RNA sequencing identifies truncating mutations in RBCK1 in a novel Mendelian disease with neuromuscular and cardiac involvement". Genome Medicine. 5 (7): 67. doi: 10.1186/gm471 . PMC   3971341 . PMID   23889995.