RBPMS

RBPMS
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 5DET, 5CYJ
Identifiers
Aliases	RBPMS , HERMES, RNA binding protein with multiple splicing, RNA binding protein, mRNA processing factor
External IDs	OMIM: 601558 MGI: 1334446 HomoloGene: 38238 GeneCards: RBPMS
Gene location (Human) Chr. Chromosome 8 (human) [1] Band 8p12 Start 30,384,511 bp [1] End 30,572,256 bp [1]
Gene location (Mouse) Chr. Chromosome 8 (mouse) [2] Band 8|8 A4 Start 34,272,671 bp [2] End 34,419,891 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in popliteal artery gastric mucosa right coronary artery thoracic aorta ascending aorta left coronary artery canal of the cervix right lobe of thyroid gland left uterine tube left lobe of thyroid gland Top expressed in ascending aorta aortic valve atrium interventricular septum right ventricle myocardium of ventricle uterus morula yolk sac atrioventricular valve More reference expression data BioGPS More reference expression data
Gene ontology Molecular function transcription coactivator activity protein binding poly(A) binding nucleic acid binding protein homodimerization activity RNA binding U1 snRNA binding snRNA stem-loop binding mRNA binding Cellular component nucleus nucleoplasm P-body cytoplasmic stress granule U1 snRNP cytoplasm cytosol Biological process positive regulation of pathway-restricted SMAD protein phosphorylation RNA processing regulation of transcription, DNA-templated transcription, DNA-templated positive regulation of SMAD protein signal transduction response to oxidative stress mRNA splicing, via spliceosome positive regulation of nucleic acid-templated transcription Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 11030 19663 Ensembl ENSG00000157110 ENSMUSG00000031586 UniProt Q93062 Q9WVB0 RefSeq (mRNA) NM_001008710 NM_001008711 NM_001008712 NM_006867 NM_001042674 NM_001042675 NM_001286168 NM_019733 RefSeq (protein) NP_001008710 NP_001008711 NP_001008712 NP_006858 NP_001036139 NP_001036140 NP_001273097 NP_062707 Location (UCSC) Chr 8: 30.38 – 30.57 Mb Chr 8: 34.27 – 34.42 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

RNA-binding protein with multiple splicing is a protein that in humans is encoded by the RBPMS gene. ^{[5] [6]}

Function

This gene encodes a member of the RRM family of RNA-binding proteins. The RRM domain is between 80-100 amino acids in length and family members contain one to four copies of the domain. The RRM domain consists of two short stretches of conserved sequence called RNP1 and RNP2, as well as a few highly conserved hydrophobic residues. The protein encoded by this gene has a single, putative RRM domain in its N-terminus. Alternative splicing results in multiple transcript variants encoding different isoforms. ^[6]

It is uniquely expressed in retinal ganglion cells in the mammalian retina, ^[7] for reasons unknown.

Interactions

RBPMS has been shown to interact with SMUG1. ^[8]

References

1. GRCh38: Ensembl release 89: ENSG00000157110 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000031586 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Shimamoto A, Kitao S, Ichikawa K, Suzuki N, Yamabe Y, Imamura O, Tokutake Y, Satoh M, Matsumoto T, Kuromitsu J, Kataoka H, Sugawara K, Sugawara M, Sugimoto M, Goto M, Furuichi Y (Nov 1996). "A unique human gene that spans over 230 kb in the human chromosome 8p11-12 and codes multiple family proteins sharing RNA-binding motifs". Proc. Natl. Acad. Sci. U.S.A. 93 (20): 10913–7. Bibcode:1996PNAS...9310913S. doi: 10.1073/pnas.93.20.10913 . PMC   38257 . PMID   8855282.
6. "Entrez Gene: RBPMS RNA binding protein with multiple splicing".
7. Rodriguez AR, de Sevilla Müller LP, Brecha NC (Mar 2014). "The RNA binding protein RBPMS is a selective marker of ganglion cells in the mammalian retina". J. Comp. Neurol. 522 (6): 1411–43. doi:10.1002/cne.23521. PMC   3959221 . PMID   24318667.
8. Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, Goldberg DS, Zhang LV, Wong SL, Franklin G, Li S, Albala JS, Lim J, Fraughton C, Llamosas E, Cevik S, Bex C, Lamesch P, Sikorski RS, Vandenhaute J, Zoghbi HY, Smolyar A, Bosak S, Sequerra R, Doucette-Stamm L, Cusick ME, Hill DE, Roth FP, Vidal M (Oct 2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID   16189514. S2CID   4427026.

Further reading

• Lim J, Hao T, Shaw C, Patel AJ, Szabó G, Rual JF, Fisk CJ, Li N, Smolyar A, Hill DE, Barabási AL, Vidal M, Zoghbi HY (2006). "A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration". Cell. 125 (4): 801–14. doi: 10.1016/j.cell.2006.03.032 . PMID   16713569. S2CID   13709685.
• Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, Goldberg DS, Zhang LV, Wong SL, Franklin G, Li S, Albala JS, Lim J, Fraughton C, Llamosas E, Cevik S, Bex C, Lamesch P, Sikorski RS, Vandenhaute J, Zoghbi HY, Smolyar A, Bosak S, Sequerra R, Doucette-Stamm L, Cusick ME, Hill DE, Roth FP, Vidal M (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID   16189514. S2CID   4427026.
• Brandenberger R, Wei H, Zhang S, Lei S, Murage J, Fisk GJ, Li Y, Xu C, Fang R, Guegler K, Rao MS, Mandalam R, Lebkowski J, Stanton LW (2004). "Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation". Nat. Biotechnol. 22 (6): 707–16. doi:10.1038/nbt971. PMID   15146197. S2CID   27764390.
• Hillman RT, Green RE, Brenner SE (2004). "An unappreciated role for RNA surveillance". Genome Biol. 5 (2): R8. doi: 10.1186/gb-2004-5-2-r8 . PMC   395752 . PMID   14759258.