RERE

For other uses, see Rere.

RERE
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 2YQK
Identifiers
Aliases	RERE , ARG, ARP, ATN1L, DNB1, arginine-glutamic acid dipeptide repeats, NEDBEH
External IDs	OMIM: 605226 MGI: 2683486 HomoloGene: 8101 GeneCards: RERE
Gene location (Human) Chr. Chromosome 1 (human) [1] Band 1p36.23 Start 8,352,397 bp [1] End 8,848,921 bp [1]
Gene location (Mouse) Chr. Chromosome 4 (mouse) [2] Band 4 E2|4 81.34 cM Start 150,281,646 bp [2] End 150,621,966 bp [2]
RNA expression pattern Bgee Top expressed in corpus callosum sural nerve testicle stomach myometrium gastrocnemius muscle prosencephalon left ventricle More reference expression data BioGPS More reference expression data
Gene ontology Molecular function GO:0001105 transcription coactivator activity sequence-specific DNA binding DNA binding GO:0001106 transcription corepressor activity GO:0001131, GO:0001151, GO:0001130, GO:0001204 DNA-binding transcription factor activity zinc ion binding chromatin binding metal ion binding GO:0001948 protein binding poly-glutamine tract binding GO:0001200, GO:0001133, GO:0001201 DNA-binding transcription factor activity, RNA polymerase II-specific Cellular component histone deacetylase complex nucleus Biological process chromatin remodeling regulation of transcription, DNA-templated dendrite morphogenesis cerebellar Purkinje cell layer maturation negative regulation of transcription by RNA polymerase II transcription, DNA-templated cerebellum development branching morphogenesis of a nerve cerebellar granule cell precursor proliferation multicellular organism development radial glia guided migration of Purkinje cell positive regulation of transcription by RNA polymerase II NLS-bearing protein import into nucleus transcription by RNA polymerase II negative regulation of nucleic acid-templated transcription regulation of transcription by RNA polymerase II positive regulation of nucleic acid-templated transcription Sources:Amigo / QuickGO
Orthologs
Species	Human	Mouse
Entrez	473	68703
Ensembl	ENSG00000142599	ENSMUSG00000039852
UniProt	Q9P2R6	Q80TZ9
RefSeq (mRNA)	NM_001042681 NM_001042682 NM_012102	NM_001085492
RefSeq (protein)	NP_001036146 NP_001036147 NP_036234	NP_001078961
Location (UCSC)	Chr 1: 8.35 – 8.85 Mb	Chr 4: 150.28 – 150.62 Mb
PubMed search	[3]	[4]
Wikidata
View/Edit Human View/Edit Mouse

Arginine-glutamic acid dipeptide repeats protein is a protein that in humans is encoded by the RERE gene. ^{[5] [6] [7]}

Function

This gene encodes a member of the atrophin family of arginine-glutamic acid (RE) dipeptide repeat-containing proteins. The encoded protein co-localizes with a transcription factor in the nucleus, and its overexpression triggers apoptosis. A similar protein in mouse associates with histone deacetylase and is thought to function as a transcriptional co-repressor during embryonic development. Recent reports also indicate that RERE and its Drosophila homolog associate with histone methyltransferases in regulating gene expression. Multiple transcript variants encoding different isoforms have been found for this gene. ^[7]

Interactions

RERE has been shown to interact with ATN1. ^[5]

References

1. GRCh38: Ensembl release 89: ENSG00000142599 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000039852 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Yanagisawa H, Bundo M, Miyashita T, Okamura-Oho Y, Tadokoro K, Tokunaga K, Yamada M (May 2000). "Protein binding of a DRPLA family through arginine-glutamic acid dipeptide repeats is enhanced by extended polyglutamine". Human Molecular Genetics. 9 (9): 1433–42. doi: 10.1093/hmg/9.9.1433 . PMID   10814707.
6. Amler LC, Bauer A, Corvi R, Dihlmann S, Praml C, Cavenee WK, Schwab M, Hampton GM (Mar 2000). "Identification and characterization of novel genes located at the t(1;15)(p36.2;q24) translocation breakpoint in the neuroblastoma cell line NGP". Genomics. 64 (2): 195–202. doi:10.1006/geno.1999.6097. PMID   10729226.
7. "Entrez Gene: RERE arginine-glutamic acid dipeptide (RE) repeats".

Further reading

• Wang L, Rajan H, Pitman JL, McKeown M, Tsai CC (Mar 2006). "Histone deacetylase-associating Atrophin proteins are nuclear receptor corepressors". Genes & Development. 20 (5): 525–30. doi:10.1101/gad.1393506. PMC   1410805 . PMID   16481466.
• Wang L, Charroux B, Kerridge S, Tsai CC (Jun 2008). "Atrophin recruits HDAC1/2 and G9a to modify histone H3K9 and to determine cell fates". EMBO Reports. 9 (6): 555–62. doi:10.1038/embor.2008.67. PMC   2427389 . PMID   18451879.
• Seki N, Ohira M, Nagase T, Ishikawa K, Miyajima N, Nakajima D, Nomura N, Ohara O (Oct 1997). "Characterization of cDNA clones in size-fractionated cDNA libraries from human brain". DNA Research. 4 (5): 345–9. doi: 10.1093/dnares/4.5.345 . PMID   9455484.
• Waerner T, Gardellin P, Pfizenmaier K, Weith A, Kraut N (Apr 2001). "Human RERE is localized to nuclear promyelocytic leukemia oncogenic domains and enhances apoptosis". Cell Growth & Differentiation. 12 (4): 201–10. PMID   11331249.
• Yi J, Kloeker S, Jensen CC, Bockholt S, Honda H, Hirai H, Beckerle MC (Mar 2002). "Members of the Zyxin family of LIM proteins interact with members of the p130Cas family of signal transducers". The Journal of Biological Chemistry. 277 (11): 9580–9. doi: 10.1074/jbc.M106922200 . PMID   11782456.
• Wistow G, Bernstein SL, Wyatt MK, Behal A, Touchman JW, Bouffard G, Smith D, Peterson K (Jun 2002). "Expressed sequence tag analysis of adult human lens for the NEIBank Project: over 2000 non-redundant transcripts, novel genes and splice variants". Molecular Vision. 8: 171–84. PMID   12107413.
• Tomarev SI, Wistow G, Raymond V, Dubois S, Malyukova I (Jun 2003). "Gene expression profile of the human trabecular meshwork: NEIBank sequence tag analysis". Investigative Ophthalmology & Visual Science. 44 (6): 2588–96. doi: 10.1167/iovs.02-1099 . PMID   12766061.
• Zoltewicz JS, Stewart NJ, Leung R, Peterson AS (Jan 2004). "Atrophin 2 recruits histone deacetylase and is required for the function of multiple signaling centers during mouse embryogenesis" (PDF). Development. 131 (1): 3–14. doi: 10.1242/dev.00908 . PMID   14645126. S2CID   20498980.
• Beausoleil SA, Jedrychowski M, Schwartz D, Elias JE, Villén J, Li J, Cohn MA, Cantley LC, Gygi SP (Aug 2004). "Large-scale characterization of HeLa cell nuclear phosphoproteins". Proceedings of the National Academy of Sciences of the United States of America. 101 (33): 12130–5. Bibcode:2004PNAS..10112130B. doi: 10.1073/pnas.0404720101 . PMC   514446 . PMID   15302935.
• Otsuki T, Ota T, Nishikawa T, Hayashi K, Suzuki Y, Yamamoto J, Wakamatsu A, Kimura K, Sakamoto K, Hatano N, Kawai Y, Ishii S, Saito K, Kojima S, Sugiyama T, Ono T, Okano K, Yoshikawa Y, Aotsuka S, Sasaki N, Hattori A, Okumura K, Nagai K, Sugano S, Isogai T (2007). "Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries". DNA Research. 12 (2): 117–26. doi: 10.1093/dnares/12.2.117 . PMID   16303743.
• Kimura K, Wakamatsu A, Suzuki Y, Ota T, Nishikawa T, Yamashita R, Yamamoto J, Sekine M, Tsuritani K, Wakaguri H, Ishii S, Sugiyama T, Saito K, Isono Y, Irie R, Kushida N, Yoneyama T, Otsuka R, Kanda K, Yokoi T, Kondo H, Wagatsuma M, Murakawa K, Ishida S, Ishibashi T, Takahashi-Fujii A, Tanase T, Nagai K, Kikuchi H, Nakai K, Isogai T, Sugano S (Jan 2006). "Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes". Genome Research. 16 (1): 55–65. doi:10.1101/gr.4039406. PMC   1356129 . PMID   16344560.
• Lim J, Hao T, Shaw C, Patel AJ, Szabó G, Rual JF, Fisk CJ, Li N, Smolyar A, Hill DE, Barabási AL, Vidal M, Zoghbi HY (May 2006). "A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration". Cell. 125 (4): 801–14. doi: 10.1016/j.cell.2006.03.032 . PMID   16713569. S2CID   13709685.
• Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M (Nov 2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks". Cell. 127 (3): 635–48. doi: 10.1016/j.cell.2006.09.026 . PMID   17081983. S2CID   7827573.