SEC31A

Last updated
SEC31A
Available structures
PDB Ortholog search: PDBe RCSB
Identifiers
Aliases SEC31A , ABP125, ABP130, HSPC334, SEC31L1, HSPC275, SEC31 homolog A, COPII coat complex component, NEDSOSB, HPBKS
External IDs OMIM: 610257 MGI: 1916412 HomoloGene: 42056 GeneCards: SEC31A
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)
RefSeq (protein)
Location (UCSC) Chr 4: 82.82 – 82.9 Mb Chr 5: 100.51 – 100.56 Mb
PubMed search [3] [4]
Wikidata
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Protein transport protein Sec31A is a protein that in humans is encoded by the SEC31A gene. [5] [6] [7]

The protein encoded by this gene is similar to the SEC31 protein from yeast. The yeast SEC31 protein is known to be a component of the COPII protein complex, which is responsible for vesicle budding from endoplasmic reticulum (ER). This protein was found to colocalize with SEC13, one of the other components of COPII, in the subcellular structures corresponding to the vesicle transport function. An immunodepletion experiment confirmed that this protein is required for ER-Golgi transport. Alternative splicing results in multiple transcript variants encoding different isoforms. [7]

Halperin-Birk syndrome (HLBKS), a rare autosomal recessive neurodevelopmental disorder, is caused by a null mutation in the SEC31A gene. [8]

Related Research Articles

The Coat Protein Complex II, or COPII, is a group of proteins that facilitate the formation of vesicles to transport proteins from the endoplasmic reticulum to the Golgi apparatus or endoplasmic-reticulum–Golgi intermediate compartment. This process is termed anterograde transport, in contrast to the retrograde transport associated with the COPI complex. COPII is assembled in two parts: first an inner layer of Sar1, Sec23, and Sec24 forms; then the inner coat is surrounded by an outer lattice of Sec13 and Sec31.

HERPUD1

Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein is a protein that in humans is encoded by the HERPUD1 gene.

SEC61B Mammalian protein found in Homo sapiens

Protein transport protein Sec61 subunit beta is a protein that in humans is encoded by the SEC61B gene.

UBE2G2 Protein-coding gene in the species Homo sapiens

Ubiquitin-conjugating enzyme E2 G2 is a protein that in humans is encoded by the UBE2G2 gene.

SEC13

Protein SEC13 homolog is a protein that in humans is encoded by the SEC13 gene.

KDELR1 Protein-coding gene in the species Homo sapiens

KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1, also known as KDELR1, is a protein which in humans is encoded by the KDELR1 gene.

ALG2 Protein-coding gene in the species Homo sapiens

Alpha-1,3/1,6-mannosyltransferase ALG2 is an enzyme that is encoded by the ALG2 gene. Mutations in the human gene are associated with congenital defects in glycosylation The protein encoded by the ALG2 gene belongs to two classes of enzymes: GDP-Man:Man1GlcNAc2-PP-dolichol alpha-1,3-mannosyltransferase and GDP-Man:Man2GlcNAc2-PP-dolichol alpha-1,6-mannosyltransferase.

RRBP1

Ribosome-binding protein 1, also referred to as p180, is a protein that in humans is encoded by the RRBP1 gene.

COG3

Conserved oligomeric Golgi complex subunit 3 is a protein that in humans is encoded by the COG3 gene.

CLN8 Protein-coding gene in the species Homo sapiens

Protein CLN8 is a protein that in humans is encoded by the CLN8 gene.

SIL1

Nucleotide exchange factor SIL1 is a protein that in humans is encoded by the SIL1 gene.

SSR2 Protein-coding gene in the species Homo sapiens

Translocon-associated protein subunit beta also known as TRAP-beta is a protein that in humans is encoded by the SSR2 gene.

KDELR2

ER lumen protein retaining receptor 2 is a protein that in humans is encoded by the KDELR2 gene.

SEC22A

Vesicle-trafficking protein SEC22a is a protein that in humans is encoded by the SEC22A gene.

SEC24C

Protein transport protein Sec24C is a protein that in humans is encoded by the SEC24C gene.

SEC24D

Protein transport protein Sec24D is a protein that in humans is encoded by the SEC24D gene.

SEC24B

Protein transport protein Sec24B is a protein that in humans is encoded by the SEC24B gene.

SEC23IP

SEC23-interacting protein is a protein that in humans is encoded by the SEC23IP gene.

SEC31 is a protein which in yeast promotes the formation of COPII transport vesicles from the Endoplasmic Reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.

Halperin-Birk syndrome (HLBKS) is a rare autosomal recessive neurodevelopmental disorder caused by a null mutation in the SEC31A gene. Signs and symptoms include intrauterine growth retardation, marked developmental delay, spastic quadriplegia with profound contractures, dysmorphism, and optic nerve atrophy with no eye fixation. Brain MRI demonstrated microcephaly and agenesis of the corpus callosum.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000138674 - Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000035325 - Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Nagase T, Ishikawa K, Suyama M, Kikuno R, Hirosawa M, Miyajima N, et al. (December 1998). "Prediction of the coding sequences of unidentified human genes. XII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro". DNA Research. 5 (6): 355–364. doi: 10.1093/dnares/5.6.355 . PMID   10048485.
  6. Tang BL, Zhang T, Low DY, Wong ET, Horstmann H, Hong W (May 2000). "Mammalian homologues of yeast sec31p. An ubiquitously expressed form is localized to endoplasmic reticulum (ER) exit sites and is essential for ER-Golgi transport". The Journal of Biological Chemistry. 275 (18): 13597–13604. doi: 10.1074/jbc.275.18.13597 . PMID   10788476.
  7. 1 2 "Entrez Gene: SEC31A SEC31 homolog A (S. cerevisiae)".
  8. Halperin D, Kadir R, Perez Y, Drabkin M, Yogev Y, Wormser O, et al. (March 2019). "SEC31A mutation affects ER homeostasis, causing a neurological syndrome". Journal of Medical Genetics. 56 (3): 139–148. doi:10.1136/jmedgenet-2018-105503. PMID   30464055. S2CID   53717389.

Further reading