SEMA3B

SEMA3B
Identifiers
Aliases	SEMA3B , LUCA-1, SEMA5, SEMAA, SemA, semaV, semaphorin 3B
External IDs	OMIM: 601281 MGI: 107561 HomoloGene: 20972 GeneCards: SEMA3B
Gene location (Human) Chr. Chromosome 3 (human) [1] Band 3p21.31 Start 50,267,558 bp [1] End 50,277,546 bp [1]
Gene location (Mouse) Chr. Chromosome 9 (mouse) [2] Band 9 F1|9 58.31 cM Start 107,474,873 bp [2] End 107,486,428 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in tibial nerve Right adrenal gland sural nerve middle frontal gyrus trigeminal ganglion olfactory bulb optic nerve spinal ganglia inferior ganglion of vagus nerve canal of the cervix Top expressed in sciatic nerve calvaria utricle ankle joint retinal pigment epithelium iris duodenum ciliary body saccule ascending aorta More reference expression data BioGPS More reference expression data
Gene ontology Molecular function neuropilin binding semaphorin receptor binding chemorepellent activity Cellular component extracellular region endoplasmic reticulum extracellular space integral component of plasma membrane collagen-containing extracellular matrix Biological process axon guidance cell-cell signaling negative chemotaxis neural crest cell migration positive regulation of cell migration negative regulation of axon extension involved in axon guidance chemorepulsion of axon semaphorin-plexin signaling pathway Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 7869 20347 Ensembl ENSG00000012171 ENSMUSG00000057969 UniProt Q13214 Q62177 RefSeq (mRNA) NM_001005914 NM_001290060 NM_001290061 NM_001290062 NM_001290063 NM_004636 NM_001042779 NM_001291537 NM_001291538 NM_001291539 NM_009153 RefSeq (protein) NP_001005914 NP_001276989 NP_001276990 NP_001276991 NP_001276992 NP_004627 n/a Location (UCSC) Chr 3: 50.27 – 50.28 Mb Chr 9: 107.47 – 107.49 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Semaphorin-3B is a protein that in humans is encoded by the SEMA3B gene. ^{[5] [6] [7]}

Function

The semaphorin/collapsin family of molecules plays a critical role in the guidance of growth cones during neuronal development. The secreted protein encoded by this gene family member is important in axonal guidance and has been shown to act as a tumor suppressor by inducing apoptosis. ^[7]

References

1. GRCh38: Ensembl release 89: ENSG00000012171 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000057969 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Püschel AW, Adams RH, Betz H (May 1995). "Murine semaphorin D/collapsin is a member of a diverse gene family and creates domains inhibitory for axonal extension". Neuron. 14 (5): 941–8. doi: 10.1016/0896-6273(95)90332-1 . PMID   7748561.
6. Sekido Y, Bader S, Latif F, Chen JY, Duh FM, Wei MH, Albanesi JP, Lee CC, Lerman MI, Minna JD (April 1996). "Human semaphorins A(V) and IV reside in the 3p21.3 small cell lung cancer deletion region and demonstrate distinct expression patterns". Proceedings of the National Academy of Sciences of the United States of America. 93 (9): 4120–5. Bibcode:1996PNAS...93.4120S. doi: 10.1073/pnas.93.9.4120 . PMC   39497 . PMID   8633026.
7. "Entrez Gene: SEMA3B sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B".

Further reading

• Wei MH, Latif F, Bader S, Kashuba V, Chen JY, Duh FM, Sekido Y, Lee CC, Geil L, Kuzmin I, Zabarovsky E, Klein G, Zbar B, Minna JD, Lerman MI (April 1996). "Construction of a 600-kilobase cosmid clone contig and generation of a transcriptional map surrounding the lung cancer tumor suppressor gene (TSG) locus on human chromosome 3p21.3: progress toward the isolation of a lung cancer TSG". Cancer Research. 56 (7): 1487–92. PMID   8603390.
• Takahashi T, Nakamura F, Jin Z, Kalb RG, Strittmatter SM (October 1998). "Semaphorins A and E act as antagonists of neuropilin-1 and agonists of neuropilin-2 receptors". Nature Neuroscience. 1 (6): 487–93. doi:10.1038/2203. PMID   10196546. S2CID   38320889.
• Lerman MI, Minna JD (November 2000). "The 630-kb lung cancer homozygous deletion region on human chromosome 3p21.3: identification and evaluation of the resident candidate tumor suppressor genes. The International Lung Cancer Chromosome 3p21.3 Tumor Suppressor Gene Consortium". Cancer Research. 60 (21): 6116–33. PMID   11085536.
• Tomizawa Y, Sekido Y, Kondo M, Gao B, Yokota J, Roche J, Drabkin H, Lerman MI, Gazdar AF, Minna JD (November 2001). "Inhibition of lung cancer cell growth and induction of apoptosis after reexpression of 3p21.3 candidate tumor suppressor gene SEMA3B". Proceedings of the National Academy of Sciences of the United States of America. 98 (24): 13954–9. Bibcode:2001PNAS...9813954T. doi: 10.1073/pnas.231490898 . PMC   61148 . PMID   11717452.
• Tse C, Xiang RH, Bracht T, Naylor SL (January 2002). "Human Semaphorin 3B (SEMA3B) located at chromosome 3p21.3 suppresses tumor formation in an adenocarcinoma cell line". Cancer Research. 62 (2): 542–6. PMID   11809707.
• Ochi K, Mori T, Toyama Y, Nakamura Y, Arakawa H (2002). "Identification of semaphorin3B as a direct target of p53". Neoplasia. 4 (1): 82–7. doi:10.1038/sj.neo.7900211. PMC   1503310 . PMID   11922394.
• Kuroki T, Trapasso F, Yendamuri S, Matsuyama A, Alder H, Williams NN, Kaiser LR, Croce CM (June 2003). "Allelic loss on chromosome 3p21.3 and promoter hypermethylation of semaphorin 3B in non-small cell lung cancer". Cancer Research. 63 (12): 3352–5. PMID   12810670.
• Castro-Rivera E, Ran S, Thorpe P, Minna JD (August 2004). "Semaphorin 3B (SEMA3B) induces apoptosis in lung and breast cancer, whereas VEGF165 antagonizes this effect". Proceedings of the National Academy of Sciences of the United States of America. 101 (31): 11432–7. Bibcode:2004PNAS..10111432C. doi: 10.1073/pnas.0403969101 . PMC   509218 . PMID   15273288.
• Marsit CJ, Wiencke JK, Liu M, Kelsey KT (August 2005). "The race associated allele of Semaphorin 3B (SEMA3B) T415I and its role in lung cancer in African-Americans and Latino-Americans". Carcinogenesis. 26 (8): 1446–9. doi: 10.1093/carcin/bgi098 . PMID   15831529.
• Nair PN, McArdle L, Cornell J, Cohn SL, Stallings RL (April 2007). "High-resolution analysis of 3p deletion in neuroblastoma and differential methylation of the SEMA3B tumor suppressor gene". Cancer Genetics and Cytogenetics. 174 (2): 100–10. doi:10.1016/j.cancergencyto.2006.11.017. PMID   17452250.