SENP1

Last updated
SENP1
Protein SENP1 PDB 2ckg.png
Available structures
PDB Ortholog search: PDBe RCSB
Identifiers
Aliases SENP1 , SuPr-2, SUMO1/sentrin specific peptidase 1, SUMO specific peptidase 1
External IDs OMIM: 612157; MGI: 2445054; HomoloGene: 8731; GeneCards: SENP1; OMA:SENP1 - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_001267594
NM_001267595
NM_014554

NM_144851
NM_001379573

RefSeq (protein)

NP_001254523
NP_001254524

NP_659100
NP_001366502

Location (UCSC) Chr 12: 48.04 – 48.11 Mb Chr 15: 97.94 – 97.99 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Sentrin-specific protease 1 is an enzyme that in humans is encoded by the SENP1 gene. [5] [6] [7]

General

There are six known SUMO proteases in humans that have been designated SENP1-3 and SENP5-7 (sentrin/SUMO-specific protease). The six proteases possess a conserved C-terminal domain which are variable in size, and with a distinct N-terminal domain between them. The C-terminal domain shows catalytic activity and the N-terminal domain regulates cell localization and substrate specificity. [8]

Features

SENP1 (Sentrin-specific protease 1) is a human protease of 643 amino acids with a molecular weight of 73 kDa, EC number in humans 3.4.22.B70. It adopts a conformation that identifies it as a member of the superfamily of cysteine proteases, which contain a catalytic triad with three characterized amino acids: a cysteine at position 603, a histidine at position 533 and aspartic acid at position 550. The primary nucleophile is cysteine located at the N-terminal alpha helix of the protein core. The other two amino acids, aspartate and histidine, are located in the end of a beta sheet. [9]

SENP1 The catalytic site consists of three amino acids: Cys 602, His 533 and Asp 550. SENP1.png
SENP1 The catalytic site consists of three amino acids: Cys 602, His 533 and Asp 550.

Location

Both SENP1 are located in the nucleus and cytosol depending on the cell type, although it has been seen to be exported out from the nucleus to the cytosol through a sequence of nuclear export (NES) that is located at the C-terminus. The mammalian SENP1 is localized mainly in the nucleus. [10]

Function

SENP1 catalyzes maturation of SUMO protein (small ubiquitin-related modifier). SENP1 causes hydrolysis of a peptide bond of SUMO in the conserved sequence Gly-Gly-|-Ala-Thr-Tyr at the C-terminus, [11] which can then be conjugated to other proteins (sumoylation). [12] In vertebrates there are three members of the family of SUMO: SUMO-1, -2 and -3. SENP1 can catalyze the maturation of any of these three. This conjugation of SUMO toward other proteins is similar to ubiquitination, however these modifications can lead to different outcomes depending on the type of protein being modified. [13]

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References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000079387 Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000033075 Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Gong L, Millas S, Maul GG, Yeh ET (Feb 2000). "Differential regulation of sentrinized proteins by a novel sentrin-specific protease". The Journal of Biological Chemistry. 275 (5): 3355–9. doi: 10.1074/jbc.275.5.3355 . PMID   10652325.
  6. Bailey D, O'Hare P (Jan 2004). "Characterization of the localization and proteolytic activity of the SUMO-specific protease, SENP1". The Journal of Biological Chemistry. 279 (1): 692–703. doi: 10.1074/jbc.M306195200 . PMID   14563852.
  7. "Entrez Gene: SENP1 SUMO1/sentrin specific peptidase 1".
  8. Xu Z, Chau SF, Lam KH, Chan HY, Ng TB, Au SW (Sep 2006). "Crystal structure of the SENP1 mutant C603S-SUMO complex reveals the hydrolytic mechanism of SUMO-specific protease". The Biochemical Journal. 398 (3): 345–52. doi:10.1042/BJ20060526. PMC   1559472 . PMID   16712526.
  9. Shen LN, Dong C, Liu H, Naismith JH, Hay RT (2006). "The structure of SENP1-SUMO-2 complex suggests a structural basis for discrimination between SUMO paralogues during processing". The Biochemical Journal. 397 (2): 279–288. doi:10.1042/BJ20052030. PMC   1513277 . PMID   16553580.
  10. Kim YH, Sung KS, Lee SJ, Kim YO, Choi CY, Kim Y (2005). "Desumoylation of homeodomain-interacting protein kinase 2 (HIPK2) through the cytoplasmic-nuclear shuttling of the SUMO-specific protease SENP1". FEBS Letters. 579 (27): 6272–6278. doi:10.1016/j.febslet.2005.10.010. PMID   16253240. S2CID   13388952.
  11. "SENP1 - Sentrin-specific protease 1 - Homo sapiens (Human) - SENP1 gene & protein".
  12. Xu Z, Au SW (2005). "Mapping residues of SUMO precursors essential in differential maturation by SUMO-specific protease, SENP1". The Biochemical Journal. 386 (Pt 2): 325–330. doi:10.1042/BJ20041210. PMC   1134797 . PMID   15487983.
  13. Xu Z, Chau SF, Lam KH, Chan HY, Ng TB, Au SW (2006). "Crystal structure of the SENP1 mutant C603S-SUMO complex reveals the hydrolytic mechanism of SUMO-specific protease". The Biochemical Journal. 398 (3): 345–52. doi:10.1042/BJ20060526. PMC   1559472 . PMID   16712526.

Further reading