SFRS5

SRSF5
Identifiers
Aliases	SRSF5 , HRS, SFRS5, SRP40, serine/arginine-rich splicing factor 5, serine and arginine rich splicing factor 5
External IDs	OMIM: 600914; MGI: 98287; HomoloGene: 134432; GeneCards: SRSF5; OMA:SRSF5 - orthologs
Gene location (Human) Chr. Chromosome 14 (human) [1] Band 14q24.1 Start 69,726,900 bp [1] End 69,772,005 bp [1]
Gene location (Mouse) Chr. Chromosome 12 (mouse) [2] Band 12|12 D1 Start 80,992,278 bp [2] End 80,997,281 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in right uterine tube right hemisphere of cerebellum anterior pituitary left lobe of thyroid gland left ovary right lobe of thyroid gland gastric mucosa Achilles tendon granulocyte right ovary Top expressed in neural layer of retina olfactory bulb ovary tail of embryo Cerebellum granulocyte cerebellar cortex lens genital tubercle lung More reference expression data BioGPS More reference expression data
Gene ontology Molecular function protein binding nucleic acid binding protein kinase B binding RNA binding Cellular component nucleoplasm nucleolus nucleus cytosol nuclear speck Biological process mRNA splicing, via spliceosome termination of RNA polymerase II transcription mRNA processing mRNA export from nucleus regulation of cell cycle liver regeneration mRNA splice site selection cellular response to insulin stimulus mRNA 3'-end processing liver development RNA splicing response to insulin RNA export from nucleus positive regulation of RNA splicing regulation of alternative mRNA splicing, via spliceosome mRNA cis splicing, via spliceosome Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 6430 20384 Ensembl ENSG00000100650 ENSMUSG00000021134 UniProt Q13243 O35326 RefSeq (mRNA) NM_001039465 NM_006925 NM_001320214 NM_001079694 NM_001079695 NM_009159 NM_001347415 NM_001347416 RefSeq (protein) NP_001034554 NP_001307143 NP_008856 NP_001073162 NP_001073163 NP_001334344 NP_001334345 NP_033185 Location (UCSC) Chr 14: 69.73 – 69.77 Mb Chr 12: 80.99 – 81 Mb PubMed search [3] [4]
Wikidata
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Splicing factor, arginine/serine-rich 5 is a protein that in humans is encoded by the SFRS5 gene. ^{[5] [6]}

References

1. GRCh38: Ensembl release 89: ENSG00000100650 – Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000021134 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Diamond RH, Du K, Lee VM, Mohn KL, Haber BA, Tewari DS, Taub R (July 1993). "Novel delayed-early and highly insulin-induced growth response genes. Identification of HRS, a potential regulator of alternative pre-mRNA splicing". The Journal of Biological Chemistry. 268 (20): 15185–92. doi: 10.1016/S0021-9258(18)82454-1 . PMID   7686911.
6. "Entrez Gene: SFRS5 splicing factor, arginine/serine-rich 5".

Further reading

• Zahler AM, Lane WS, Stolk JA, Roth MB (May 1992). "SR proteins: a conserved family of pre-mRNA splicing factors". Genes & Development. 6 (5): 837–47. doi: 10.1101/gad.6.5.837 . PMID   1577277.
• Screaton GR, Cáceres JF, Mayeda A, Bell MV, Plebanski M, Jackson DG, Bell JI, Krainer AR (September 1995). "Identification and characterization of three members of the human SR family of pre-mRNA splicing factors". The EMBO Journal. 14 (17): 4336–49. doi:10.1002/j.1460-2075.1995.tb00108.x. PMC   394518 . PMID   7556075.
• Gui JF, Lane WS, Fu XD (June 1994). "A serine kinase regulates intracellular localization of splicing factors in the cell cycle". Nature. 369 (6482): 678–82. Bibcode:1994Natur.369..678G. doi:10.1038/369678a0. PMID   8208298. S2CID   4275539. Archived from the original on 2020-12-03. Retrieved 2019-12-13.
• Andersson B, Wentland MA, Ricafrente JY, Liu W, Gibbs RA (April 1996). "A "double adaptor" method for improved shotgun library construction". Analytical Biochemistry. 236 (1): 107–13. doi:10.1006/abio.1996.0138. PMID   8619474.
• Yu W, Andersson B, Worley KC, Muzny DM, Ding Y, Liu W, Ricafrente JY, Wentland MA, Lennon G, Gibbs RA (April 1997). "Large-scale concatenation cDNA sequencing". Genome Research. 7 (4): 353–8. doi:10.1101/gr.7.4.353. PMC   139146 . PMID   9110174.
• Snow BE, Heng HH, Shi XM, Zhou Y, Du K, Taub R, Tsui LC, McInnes RR (July 1997). "Expression analysis and chromosomal assignment of the human SFRS5/SRp40 gene". Genomics. 43 (2): 165–70. doi: 10.1006/geno.1997.4794 . PMID   9244433.
• Du K, Taub R (December 1997). "Alternative splicing and structure of the human and mouse SFRS5/HRS/SRp40 genes". Gene. 204 (1–2): 243–9. doi:10.1016/S0378-1119(97)00552-0. PMID   9434190.
• Blencowe BJ, Issner R, Nickerson JA, Sharp PA (April 1998). "A coactivator of pre-mRNA splicing". Genes & Development. 12 (7): 996–1009. doi:10.1101/gad.12.7.996. PMC   316672 . PMID   9531537.
• Papoutsopoulou S, Nikolakaki E, Chalepakis G, Kruft V, Chevaillier P, Giannakouros T (July 1999). "SR protein-specific kinase 1 is highly expressed in testis and phosphorylates protamine 1". Nucleic Acids Research. 27 (14): 2972–80. doi:10.1093/nar/27.14.2972. PMC   148514 . PMID   10390541.
• Guil S, Gattoni R, Carrascal M, Abián J, Stévenin J, Bach-Elias M (April 2003). "Roles of hnRNP A1, SR proteins, and p68 helicase in c-H-ras alternative splicing regulation". Molecular and Cellular Biology. 23 (8): 2927–41. doi:10.1128/MCB.23.8.2927-2941.2003. PMC   152554 . PMID   12665590.
• Liu L, Amy V, Liu G, McKeehan WL (2003). "Novel complex integrating mitochondria and the microtubular cytoskeleton with chromosome remodeling and tumor suppressor RASSF1 deduced by in silico homology analysis, interaction cloning in yeast, and colocalization in cultured cells". In Vitro Cellular & Developmental Biology. Animal. 38 (10): 582–94. doi:10.1290/1543-706X(2002)38<582:NCIMAT>2.0.CO;2. PMC   3225227 . PMID   12762840.
• Li J, Hawkins IC, Harvey CD, Jennings JL, Link AJ, Patton JG (November 2003). "Regulation of alternative splicing by SRrp86 and its interacting proteins". Molecular and Cellular Biology. 23 (21): 7437–47. doi:10.1128/MCB.23.21.7437-7447.2003. PMC   207616 . PMID   14559993.
• de Graaf K, Hekerman P, Spelten O, Herrmann A, Packman LC, Büssow K, Müller-Newen G, Becker W (February 2004). "Characterization of cyclin L2, a novel cyclin with an arginine/serine-rich domain: phosphorylation by DYRK1A and colocalization with splicing factors". The Journal of Biological Chemistry. 279 (6): 4612–24. doi: 10.1074/jbc.M310794200 . PMID   14623875.
• Hillman RT, Green RE, Brenner SE (2005). "An unappreciated role for RNA surveillance". Genome Biology. 5 (2): R8. doi: 10.1186/gb-2004-5-2-r8 . PMC   395752 . PMID   14759258.
• Ropers D, Ayadi L, Gattoni R, Jacquenet S, Damier L, Branlant C, Stévenin J (July 2004). "Differential effects of the SR proteins 9G8, SC35, ASF/SF2, and SRp40 on the utilization of the A1 to A5 splicing sites of HIV-1 RNA". The Journal of Biological Chemistry. 279 (29): 29963–73. doi: 10.1074/jbc.M404452200 . PMID   15123677.
• Caputi M, Freund M, Kammler S, Asang C, Schaal H (June 2004). "A bidirectional SF2/ASF- and SRp40-dependent splicing enhancer regulates human immunodeficiency virus type 1 rev, env, vpu, and nef gene expression". Journal of Virology. 78 (12): 6517–26. doi:10.1128/JVI.78.12.6517-6526.2004. PMC   416506 . PMID   15163745.
• Beausoleil SA, Jedrychowski M, Schwartz D, Elias JE, Villén J, Li J, Cohn MA, Cantley LC, Gygi SP (August 2004). "Large-scale characterization of HeLa cell nuclear phosphoproteins". Proceedings of the National Academy of Sciences of the United States of America. 101 (33): 12130–5. Bibcode:2004PNAS..10112130B. doi: 10.1073/pnas.0404720101 . PMC   514446 . PMID   15302935.