SFRS5

SRSF5
Identifiers
Aliases	SRSF5 , HRS, SFRS5, SRP40, serine/arginine-rich splicing factor 5, serine and arginine rich splicing factor 5
External IDs	OMIM: 600914 HomoloGene: 134432 GeneCards: SRSF5
Gene location (Human)
Chr.	Chromosome 14 (human)
End	69,772,005 bp
RNA expression pattern
	Top expressed in
	right uterine tube; ; anterior pituitary; ; left lobe of thyroid gland; ; right lobe of thyroid gland; ; gastric mucosa; ; Achilles tendon; ; right lung; ; tibial nerve; ; skin of abdomen; ; monocyte;
	n/a
	More reference expression data
	; ;
	More reference expression data
Gene ontology
Molecular function	protein binding ; nucleic acid binding ; protein kinase B binding ; RNA binding ;
Cellular component	nucleoplasm ; nucleolus ; nucleus ; cytosol ; nuclear speck ;
Biological process	mRNA splicing, via spliceosome ; termination of RNA polymerase II transcription ; mRNA processing ; mRNA export from nucleus ; regulation of cell cycle ; liver regeneration ; mRNA splice site selection ; cellular response to insulin stimulus ; mRNA 3'-end processing ; liver development ; RNA splicing ; response to insulin ; RNA export from nucleus ; positive regulation of RNA splicing ; regulation of alternative mRNA splicing, via spliceosome ; mRNA cis splicing, via spliceosome ;
	Sources:Amigo / QuickGO
Orthologs
	6430
	n/a
	ENSG00000100650
	n/a
	Q13243
	n/a
	NM_001039465 ; NM_006925 ; NM_001320214
	n/a
	NP_001034554 ; NP_001307143 ; NP_008856
	n/a
	Wikidata
View/Edit Human

Last updated November 09, 2023

Splicing factor, arginine/serine-rich 5 is a protein that in humans is encoded by the SFRS5 gene.^[3]^[4]

Related Research Articles

SR proteins are a conserved family of proteins involved in RNA splicing. SR proteins are named because they contain a protein domain with long repeats of serine and arginine amino acid residues, whose standard abbreviations are "S" and "R" respectively. SR proteins are ~200-600 amino acids in length and composed of two domains, the RNA recognition motif (RRM) region and the RS domain. SR proteins are more commonly found in the nucleus than the cytoplasm, but several SR proteins are known to shuttle between the nucleus and the cytoplasm.

Splicing factor, arginine/serine-rich 2 is a protein that in humans is encoded by the SFRS2 gene. MDS-associated splicing factor SRSF2 affects the expression of Class III and Class IV isoforms and perturbs granulopoiesis and SRSF2 P95H promotes Class IV splicing by binding to key ESE sequences in CSF3R exon 17, and that SRSF2, when mutated, contributes to dysgranulopoiesis.

snRNP70 also known as U1 small nuclear ribonucleoprotein 70 kDa is a protein that in humans is encoded by the SNRNP70 gene. snRNP70 is a small nuclear ribonucleoprotein that associates with U1 spliceosomal RNA, forming the U1snRNP a core component of the spliceosome. The U1-70K protein and other components of the spliceosome complex form detergent-insoluble aggregates in both sporadic and familial human cases of Alzheimer's disease. U1-70K co-localizes with Tau in neurofibrillary tangles in Alzheimer's disease.

Interleukin enhancer-binding factor 3 is a protein that in humans is encoded by the ILF3 gene.

Serine/arginine-Rich Splicing Factor (SRSF) protein kinase-1 SRPK1 is an enzyme that in humans is encoded by the SRPK1 gene.

Splicing factor, arginine/serine-rich 3 is a protein that in humans is encoded by the SFRS3 gene.

Splicing factor 3B subunit 1 is a protein that in humans is encoded by the SF3B1 gene.

Splicing factor, arginine/serine-rich 6 is a protein that in humans is encoded by the SFRS6 gene.

Serine/arginine-rich splicing factor 7 (SRSF7) also known as splicing factor, arginine/serine-rich 7 (SFRS7) or splicing factor 9G8 is a protein that in humans is encoded by the SRSF7 gene.

Splicing factor 3A subunit 3 is a protein that in humans is encoded by the SF3A3 gene.

Splicing factor, arginine/serine-rich 9, also known as SFRS9, is a human gene encoding an SR protein involved in splice site selection in alternative splicing.

ETS translocation variant 1 is a protein that in humans is encoded by the ETV1 gene.

Dual specificity protein kinase CLK1 is an enzyme that in humans is encoded by the CLK1 gene.

FUS-interacting serine-arginine-rich protein 1 is a protein that in humans is encoded by the SFRS13A gene.

Splicing factor, arginine/serine-rich 4 is a protein that in humans is encoded by the SFRS4 gene.

BTB/POZ domain-containing protein 2 is a protein that in humans is encoded by the BTBD2 gene.

Splicing factor, arginine/serine-rich 12 is a protein that in humans is encoded by the SFRS12 gene.

Arginine vasopressin-induced protein 1 is a protein that in humans is encoded by the AVPI1 gene.

Splicing factor, arginine/serine-rich 11 is a protein that in humans is encoded by the SFRS11 gene.

Serine/arginine-rich splicing factor 1 (SRSF1) also known as alternative splicing factor 1 (ASF1), pre-mRNA-splicing factor SF2 (SF2) or ASF1/SF2 is a protein that in humans is encoded by the SRSF1 gene. ASF/SF2 is an essential sequence specific splicing factor involved in pre-mRNA splicing. SRSF1 is the gene that codes for ASF/SF2 and is found on chromosome 17. The resulting splicing factor is a protein of approximately 33 kDa. ASF/SF2 is necessary for all splicing reactions to occur, and influences splice site selection in a concentration-dependent manner, resulting in alternative splicing. In addition to being involved in the splicing process, ASF/SF2 also mediates post-splicing activities, such as mRNA nuclear export and translation.

References

1 2 3 GRCh38: Ensembl release 89: ENSG00000100650 - Ensembl, May 2017
↑ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ Diamond RH, Du K, Lee VM, Mohn KL, Haber BA, Tewari DS, Taub R (July 1993). "Novel delayed-early and highly insulin-induced growth response genes. Identification of HRS, a potential regulator of alternative pre-mRNA splicing". The Journal of Biological Chemistry. 268 (20): 15185–92. doi: 10.1016/S0021-9258(18)82454-1 . PMID 7686911.
↑ "Entrez Gene: SFRS5 splicing factor, arginine/serine-rich 5".

Zahler AM, Lane WS, Stolk JA, Roth MB (May 1992). "SR proteins: a conserved family of pre-mRNA splicing factors". Genes & Development. 6 (5): 837–47. doi: 10.1101/gad.6.5.837 . PMID 1577277.
Screaton GR, Cáceres JF, Mayeda A, Bell MV, Plebanski M, Jackson DG, Bell JI, Krainer AR (September 1995). "Identification and characterization of three members of the human SR family of pre-mRNA splicing factors". The EMBO Journal. 14 (17): 4336–49. doi:10.1002/j.1460-2075.1995.tb00108.x. PMC 394518 . PMID 7556075.
Gui JF, Lane WS, Fu XD (June 1994). "A serine kinase regulates intracellular localization of splicing factors in the cell cycle". Nature. 369 (6482): 678–82. Bibcode:1994Natur.369..678G. doi:10.1038/369678a0. PMID 8208298. S2CID 4275539. Archived from the original on 2020-12-03. Retrieved 2019-12-13.
Andersson B, Wentland MA, Ricafrente JY, Liu W, Gibbs RA (April 1996). "A "double adaptor" method for improved shotgun library construction". Analytical Biochemistry. 236 (1): 107–13. doi:10.1006/abio.1996.0138. PMID 8619474.
Yu W, Andersson B, Worley KC, Muzny DM, Ding Y, Liu W, Ricafrente JY, Wentland MA, Lennon G, Gibbs RA (April 1997). "Large-scale concatenation cDNA sequencing". Genome Research. 7 (4): 353–8. doi:10.1101/gr.7.4.353. PMC 139146 . PMID 9110174.
Snow BE, Heng HH, Shi XM, Zhou Y, Du K, Taub R, Tsui LC, McInnes RR (July 1997). "Expression analysis and chromosomal assignment of the human SFRS5/SRp40 gene". Genomics. 43 (2): 165–70. doi: 10.1006/geno.1997.4794 . PMID 9244433.
Du K, Taub R (December 1997). "Alternative splicing and structure of the human and mouse SFRS5/HRS/SRp40 genes". Gene. 204 (1–2): 243–9. doi:10.1016/S0378-1119(97)00552-0. PMID 9434190.
Blencowe BJ, Issner R, Nickerson JA, Sharp PA (April 1998). "A coactivator of pre-mRNA splicing". Genes & Development. 12 (7): 996–1009. doi:10.1101/gad.12.7.996. PMC 316672 . PMID 9531537.
Papoutsopoulou S, Nikolakaki E, Chalepakis G, Kruft V, Chevaillier P, Giannakouros T (July 1999). "SR protein-specific kinase 1 is highly expressed in testis and phosphorylates protamine 1". Nucleic Acids Research. 27 (14): 2972–80. doi:10.1093/nar/27.14.2972. PMC 148514 . PMID 10390541.
Guil S, Gattoni R, Carrascal M, Abián J, Stévenin J, Bach-Elias M (April 2003). "Roles of hnRNP A1, SR proteins, and p68 helicase in c-H-ras alternative splicing regulation". Molecular and Cellular Biology. 23 (8): 2927–41. doi:10.1128/MCB.23.8.2927-2941.2003. PMC 152554 . PMID 12665590.
Liu L, Amy V, Liu G, McKeehan WL (2003). "Novel complex integrating mitochondria and the microtubular cytoskeleton with chromosome remodeling and tumor suppressor RASSF1 deduced by in silico homology analysis, interaction cloning in yeast, and colocalization in cultured cells". In Vitro Cellular & Developmental Biology. Animal. 38 (10): 582–94. doi:10.1290/1543-706X(2002)38<582:NCIMAT>2.0.CO;2. PMC 3225227 . PMID 12762840.
Li J, Hawkins IC, Harvey CD, Jennings JL, Link AJ, Patton JG (November 2003). "Regulation of alternative splicing by SRrp86 and its interacting proteins". Molecular and Cellular Biology. 23 (21): 7437–47. doi:10.1128/MCB.23.21.7437-7447.2003. PMC 207616 . PMID 14559993.
de Graaf K, Hekerman P, Spelten O, Herrmann A, Packman LC, Büssow K, Müller-Newen G, Becker W (February 2004). "Characterization of cyclin L2, a novel cyclin with an arginine/serine-rich domain: phosphorylation by DYRK1A and colocalization with splicing factors". The Journal of Biological Chemistry. 279 (6): 4612–24. doi: 10.1074/jbc.M310794200 . PMID 14623875.
Hillman RT, Green RE, Brenner SE (2005). "An unappreciated role for RNA surveillance". Genome Biology. 5 (2): R8. doi:10.1186/gb-2004-5-2-r8. PMC 395752 . PMID 14759258.
Ropers D, Ayadi L, Gattoni R, Jacquenet S, Damier L, Branlant C, Stévenin J (July 2004). "Differential effects of the SR proteins 9G8, SC35, ASF/SF2, and SRp40 on the utilization of the A1 to A5 splicing sites of HIV-1 RNA". The Journal of Biological Chemistry. 279 (29): 29963–73. doi: 10.1074/jbc.M404452200 . PMID 15123677.
Caputi M, Freund M, Kammler S, Asang C, Schaal H (June 2004). "A bidirectional SF2/ASF- and SRp40-dependent splicing enhancer regulates human immunodeficiency virus type 1 rev, env, vpu, and nef gene expression". Journal of Virology. 78 (12): 6517–26. doi:10.1128/JVI.78.12.6517-6526.2004. PMC 416506 . PMID 15163745.
Beausoleil SA, Jedrychowski M, Schwartz D, Elias JE, Villén J, Li J, Cohn MA, Cantley LC, Gygi SP (August 2004). "Large-scale characterization of HeLa cell nuclear phosphoproteins". Proceedings of the National Academy of Sciences of the United States of America. 101 (33): 12130–5. Bibcode:2004PNAS..10112130B. doi: 10.1073/pnas.0404720101 . PMC 514446 . PMID 15302935.

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[refGRCh38Ensembl-1] 1 2 3 GRCh38: Ensembl release 89: ENSG00000100650 - Ensembl, May 2017

[2] "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[pmid7686911-3] Diamond RH, Du K, Lee VM, Mohn KL, Haber BA, Tewari DS, Taub R (July 1993). "Novel delayed-early and highly insulin-induced growth response genes. Identification of HRS, a potential regulator of alternative pre-mRNA splicing". The Journal of Biological Chemistry. 268 (20): 15185–92. doi: 10.1016/S0021-9258(18)82454-1 . PMID 7686911.

[entrez-4] "Entrez Gene: SFRS5 splicing factor, arginine/serine-rich 5".

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SFRS5

Related Research Articles

References

Further reading