SLIT1

SLIT1
Identifiers
Aliases	SLIT1 , MEGF4, SLIL1, SLIT-1, SLIT3, slit guidance ligand 1
External IDs	OMIM: 603742 MGI: 1315203 HomoloGene: 2302 GeneCards: SLIT1
Gene location (Human) Chr. Chromosome 10 (human) [1] Band 10q24.1 Start 96,998,038 bp [1] End 97,185,959 bp [1]
Gene location (Mouse) Chr. Chromosome 19 (mouse) [2] Band 19|19 C3 Start 41,588,696 bp [2] End 41,732,104 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in middle temporal gyrus orbitofrontal cortex Region I of hippocampus proper Brodmann area 10 Brodmann area 23 Brodmann area 46 entorhinal cortex superior frontal gyrus pancreatic ductal cell frontal pole Top expressed in superior frontal gyrus urethra male urethra hippocampus proper stellate reticulum enamel knot sensory ganglion medullary collecting duct enteric nervous system medial ganglionic eminence More reference expression data BioGPS n/a
Gene ontology Molecular function calcium ion binding Roundabout binding heparin binding Cellular component extracellular region extracellular space intracellular anatomical structure Biological process chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration cell differentiation neuron projection morphogenesis dorsal/ventral axon guidance negative chemotaxis axonogenesis negative regulation of synapse assembly nervous system development telencephalon cell migration multicellular organism development forebrain morphogenesis tangential migration from the subventricular zone to the olfactory bulb olfactory bulb development motor neuron axon guidance axon extension involved in axon guidance retinal ganglion cell axon guidance axon guidance nuclear migration Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 6585 20562 Ensembl ENSG00000187122 ENSMUSG00000025020 UniProt O75093 Q80TR4 RefSeq (mRNA) NM_003061 NM_015748 RefSeq (protein) NP_003052 NP_056563 Location (UCSC) Chr 10: 97 – 97.19 Mb Chr 19: 41.59 – 41.73 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Slit homolog 1 protein is a protein that in humans is encoded by the SLIT1 gene. ^{[5] [6] [7]}

References

1. GRCh38: Ensembl release 89: ENSG00000187122 – Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000025020 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Nakayama M, Nakajima D, Nagase T, Nomura N, Seki N, Ohara O (July 1998). "Identification of high-molecular-weight proteins with multiple EGF-like motifs by motif-trap screening". Genomics. 51 (1): 27–34. doi:10.1006/geno.1998.5341. PMID   9693030.
6. Itoh A, Miyabayashi T, Ohno M, Sakano S (November 1998). "Cloning and expressions of three mammalian homologues of Drosophila slit suggest possible roles for Slit in the formation and maintenance of the nervous system". Brain Research. Molecular Brain Research. 62 (2): 175–86. doi:10.1016/S0169-328X(98)00224-1. PMID   9813312.
7. "Entrez Gene: SLIT1 slit homolog 1 (Drosophila)".

Further reading

• Nakajima D, Okazaki N, Yamakawa H, Kikuno R, Ohara O, Nagase T (June 2002). "Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones". DNA Research. 9 (3): 99–106. doi: 10.1093/dnares/9.3.99 . PMID   12168954.
• Wong K, Park HT, Wu JY, Rao Y (October 2002). "Slit proteins: molecular guidance cues for cells ranging from neurons to leukocytes". Current Opinion in Genetics & Development. 12 (5): 583–91. doi:10.1016/S0959-437X(02)00343-X. PMID   12200164.
• Liang Y, Annan RS, Carr SA, Popp S, Mevissen M, Margolis RK, Margolis RU (June 1999). "Mammalian homologues of the Drosophila slit protein are ligands of the heparan sulfate proteoglycan glypican-1 in brain". The Journal of Biological Chemistry. 274 (25): 17885–92. doi: 10.1074/jbc.274.25.17885 . PMID   10364234.
• Wu W, Wong K, Chen J, Jiang Z, Dupuis S, Wu JY, Rao Y (July 1999). "Directional guidance of neuronal migration in the olfactory system by the protein Slit". Nature. 400 (6742): 331–6. Bibcode:1999Natur.400..331W. doi:10.1038/22477. PMC   2041931 . PMID   10432110.
• Yuan W, Zhou L, Chen JH, Wu JY, Rao Y, Ornitz DM (August 1999). "The mouse SLIT family: secreted ligands for ROBO expressed in patterns that suggest a role in morphogenesis and axon guidance". Developmental Biology. 212 (2): 290–306. doi: 10.1006/dbio.1999.9371 . PMID   10433822.
• Little M, Rumballe B, Georgas K, Yamada T, Teasdale RD (2003). "Conserved modularity and potential for alternate splicing in mouse and human Slit genes". The International Journal of Developmental Biology. 46 (4): 385–91. PMID   12141424.
• Hammond R, Vivancos V, Naeem A, Chilton J, Mambetisaeva E, Mambitisaeva E, Andrews W, Sundaresan V, Guthrie S (October 2005). "Slit-mediated repulsion is a key regulator of motor axon pathfinding in the hindbrain" (PDF). Development. 132 (20): 4483–95. doi: 10.1242/dev.02038 . PMID   16162649. S2CID   25081153.
• Lim J, Hao T, Shaw C, Patel AJ, Szabó G, Rual JF, Fisk CJ, Li N, Smolyar A, Hill DE, Barabási AL, Vidal M, Zoghbi HY (May 2006). "A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration". Cell. 125 (4): 801–14. doi: 10.1016/j.cell.2006.03.032 . PMID   16713569. S2CID   13709685.
• Lin L, Isacson O (November 2006). "Axonal growth regulation of fetal and embryonic stem cell-derived dopaminergic neurons by Netrin-1 and Slits". Stem Cells. 24 (11): 2504–13. doi:10.1634/stemcells.2006-0119. PMC   2613222 . PMID   16840550.
• Hussain SA, Piper M, Fukuhara N, Strochlic L, Cho G, Howitt JA, Ahmed Y, Powell AK, Turnbull JE, Holt CE, Hohenester E (December 2006). "A molecular mechanism for the heparan sulfate dependence of slit-robo signaling". The Journal of Biological Chemistry. 281 (51): 39693–8. doi: 10.1074/jbc.M609384200 . PMC   3680705 . PMID   17062560.